Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016472 [exp] 60 / 7e-12 AT1G13570 57 / 3e-09 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 50 / 2e-08 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 49 / 4e-08 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10028369 [exp] 44 / 4e-06 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 41 / 3e-05 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 0 / 1 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040759 pacid=23157692 polypeptide=Lus10040759 locus=Lus10040759.g ID=Lus10040759.BGIv1.0 annot-version=v1.0 ATGGTTGCTCTGTTTTATGCTTTTCCAGCTCTTATGCAGCTGAAATTTGGTGTTGAATTTCTGCTCCTTCTTTGTTGTGGACATGTCCCCTACAAGTTGC CTTCATCTCTGCTCGGGTTGAAATTCCCTGGAAATCCCTCGTCTTTTACTCGGAAACTTGCACGAAATGGGGGTTTTTGTTTGTCTCATCATGAGTTCAC CCAACTTGAAGAAGATCACCATTGTTGTTGGTTCCATATGTTTGCTGTCAGCTTAAGTTGTAGCTGTAACTGTATAAAGGTAATGCTCTAG
AA sequence Show only first row Show all	>Lus10040759 pacid=23157692 polypeptide=Lus10040759 locus=Lus10040759.g ID=Lus10040759.BGIv1.0 annot-version=v1.0 MVALFYAFPALMQLKFGVEFLLLLCCGHVPYKLPSSLLGLKFPGNPSSFTRKLARNGGFCLSHHEFTQLEEDHHCCWFHMFAVSLSCSCNCIKVML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040759 [exp]	0	1
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	4.8	0.7506
					Lus10020204 [exp]	7.3	0.6959
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10012760 [exp]	9.2	0.7974
					Lus10025095 [exp]	13.0	0.7896
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012900 [exp]	16.0	0.7860
					Lus10013951 [exp]	16.3	0.7177
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	19.2	0.7793
					Lus10021782 [exp]	22.1	0.7733
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	24.2	0.7733
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	26.2	0.7733

Compare expression of checked genes

Lus10040759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.