Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 132 / 6e-34 F-box/RNI-like superfamily protein (.1) AT4G26340 62 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53635 59 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G55030 57 / 1e-08 RNI-like superfamily protein (.1) AT5G56810 57 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G67390 56 / 4e-08 F-box family protein (.1) AT2G04230 55 / 6e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G56430 55 / 6e-08 F-box/FBD-like domains containing protein (.1) AT5G56440 54 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 50 / 1e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006346 [exp] 315 / 1e-103 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 307 / 1e-100 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10016472 [exp] 219 / 6e-68 AT1G13570 57 / 3e-09 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 203 / 6e-62 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 183 / 1e-54 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10028369 [exp] 172 / 1e-50 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10040686 [exp] 151 / 2e-39 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10034414 [exp] 131 / 1e-33 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10035151 [exp] 132 / 2e-33 AT5G51170 306 / 7e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 145 / 7e-39 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 138 / 2e-36 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 138 / 2e-36 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 129 / 5e-33 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 114 / 1e-27 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 56 / 4e-08 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002100 [exp] 53 / 3e-07 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G024200 [exp] 52 / 6e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002001 [exp] 50 / 9e-07 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.015G011200 [exp] 50 / 1e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain CL0271 [flax] [poplar] PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10040760 pacid=23157761 polypeptide=Lus10040760 locus=Lus10040760.g ID=Lus10040760.BGIv1.0 annot-version=v1.0 ATGAAGCGAGGGCGACCACTTCAGTCCGATAGAAATGGAGAAAGAATTAGCAAGCTCCCCGCCGATATAATTCATCGCATTCTTACTCTCTTACCCATAA AGGAAGCCGCCAAAACAAGTCTCTTGTCTACAGAATGGAAGTATCGTTGGAGAAGCATTCCTCAGCTTGTATTCGATGGCGATTTCGCTACAATCCCTGA TATCGATCCCGAATCCGTGTGGCACAACGAGGTGATGCTGAAAATTCTCCAGTTTCTGCTTGTTCATGATGGACCCATAAACAAGTTTGAGCTTGCAATC CCTGGAATGAGCCACTGTCCTCAGCTGAACAATTTGGTCCATCACCTTAAAACGAAAACTGTCAAGGAACTAGCCCTCTTCCTTCCCTTAGGTGAACTCG TTGAATTACTACCTTCCTCTGTTTTTGCTCTTGATCTGAACCGTCTGAAAGTCACAGGTTTCACGGTTGTAGAACCACCATGGTTTATGGGATTTGGGAA CCTTACCTTTCTAGAATTGAAAGAGCTAATTCTACCCGTTAATTTCCTTGAGACTTTTCTTCCAAAGTGTCCTCTGCTTGAAGAGTTGAGAGTTGTGGAA TGCAATACAGTATCTCCTGTGTTTGTAGCGCCTTCACTCAAAGTGCTCTTCTTTCACTGCCATTTCGAGTCAATTTGCTTCAAATATGCCCCACTTCTTT CAGTGCTAACAGTTCTAGATAACGGTAAAGACGAATACGTCATAGACGACTCTGAGACAACAACACAGGATACTGATATGGTCGCTCTATTTGCTGCTCT TCCAGCTCTTCAGCAGCTGAAACTTGGTCTTGACTTGCTACTATTCCTCTGTAATGGAGATGTCCCCTACAAGTTGCCTGCATCTCTCCTCGAATTGAAA GTCCTCGAAATCCCTCGTCTTTTACTTGACAAGTGGCTGGACATGAGGGTTCTTGTTTGTTTCATCATGAGTTCACCTAACTTGCAGAAGCTCACCATTG TGCATGATTATGCCGAGGTGAATCATCCGGAGTTTGAAGATATCGATAGCTTGCAGACGTTGTTAGAACCAGAGGACCACAGTGGAGTCAGTAGTTGTCT TCAACGCCTTGAAGAGTTTAGCATTCATCGTAGTCGTGGTACTCGGGTGGAGTTGGAACTGGCAAGGTTTGTGCTAGCCACTGCGCCAGTACTTAAAAGG ATCTTCATTAAGCCTAAGAAAGGTTTATCCGCCGAAAAAGTTGCGAATTTCGTGGTGGAGTTGACACAGTATAAGCGCATATCGAAAGAAGCAGAGGTCA AATATGCATGGACGAAGAAGCCCGGTGAAGCATGA
AA sequence Show only first row Show all	>Lus10040760 pacid=23157761 polypeptide=Lus10040760 locus=Lus10040760.g ID=Lus10040760.BGIv1.0 annot-version=v1.0 MKRGRPLQSDRNGERISKLPADIIHRILTLLPIKEAAKTSLLSTEWKYRWRSIPQLVFDGDFATIPDIDPESVWHNEVMLKILQFLLVHDGPINKFELAI PGMSHCPQLNNLVHHLKTKTVKELALFLPLGELVELLPSSVFALDLNRLKVTGFTVVEPPWFMGFGNLTFLELKELILPVNFLETFLPKCPLLEELRVVE CNTVSPVFVAPSLKVLFFHCHFESICFKYAPLLSVLTVLDNGKDEYVIDDSETTTQDTDMVALFAALPALQQLKLGLDLLLFLCNGDVPYKLPASLLELK VLEIPRLLLDKWLDMRVLVCFIMSSPNLQKLTIVHDYAEVNHPEFEDIDSLQTLLEPEDHSGVSSCLQRLEEFSIHRSRGTRVELELARFVLATAPVLKR IFIKPKKGLSAEKVANFVVELTQYKRISKEAEVKYAWTKKPGEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	0	1
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	1.0	0.8877
AT5G16650			Chaperone DnaJ-domain superfam...		Lus10000010 [exp]	2.6	0.8481
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	6.5	0.8490
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10033644 [exp]	8.0	0.8273
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	8.6	0.8820
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	12.8	0.8746
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	13.3	0.8642
AT3G12760			unknown protein		Lus10009599 [exp]	14.7	0.8283
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	18.7	0.8411
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	19.0	0.8367

Compare expression of checked genes

Lus10040760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.