Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 223 / 7e-74 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 204 / 2e-66 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29490 195 / 8e-63 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29480 194 / 3e-62 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29440 190 / 1e-60 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT2G29450 188 / 5e-60 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29470 181 / 3e-57 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT2G29460 179 / 3e-56 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT1G78370 167 / 8e-52 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78380 167 / 1e-51 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016469 [exp] 346 / 4e-122 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 323 / 6e-113 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 315 / 6e-110 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 254 / 2e-85 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 229 / 3e-76 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10040727 [exp] 226 / 2e-74 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 220 / 2e-72 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10001640 [exp] 215 / 3e-70 AT2G29420 206 / 6e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016470 [exp] 209 / 1e-68 AT2G29420 166 / 6e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070900 [exp] 201 / 6e-65 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.012G052200 [exp] 197 / 1e-63 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 188 / 5e-60 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 186 / 3e-59 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 185 / 1e-58 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 183 / 5e-58 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.002G254000 [exp] 181 / 3e-57 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 179 / 2e-56 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.016G104500 [exp] 174 / 9e-56 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.010G035500 [exp] 174 / 3e-54 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040761 pacid=23157748 polypeptide=Lus10040761 locus=Lus10040761.g ID=Lus10040761.BGIv1.0 annot-version=v1.0 ATGGGAGAGGAAATCAAGCTACTTGGAGGGTCGGTTAGCCAGTTCAGCCGCAGGATCGAATTAGTCCTGAAACTGAAGGGCTTAGAGTTCCAATATGTGG AGGAAGACCTTGCCAACAAGAGCGATCTTCTCCTCGAGTCAAACCCAGTTCACAAGAAGATCCCCGTCTTCTTCCACAACGGCAAGCCGATAGCGGAATC ACTCATTATCATCGAGTATATCGACGAAACCTGGGGATCAAGCTACCCAATCCTGCCTAAAGATCCTTATGACAGAGCCATTGCTCGCTTCTGGGTCAAG TTCGCTGACGACAAGGTGTGGCCGACGGCGTTAAAGGCTTACACAGGGAAGGACAAAGAACAAAAGGACGGGATTGAGGAATTCACCCTGCAGATTAAAT ATCTCGAAGGGGAGCTGAAGGGGGAGGAGTATTTCGGAGGCGAAAGGATCGGATTTGTGGACATTGCCGCGTTCTTCATCCTGTACTGGATTCAAGTGAT GCAGGAAGTTGTGAAAATAGAGCTGATGACCAAAGACAAGTTCCCTGTAATTTTCAAATGGATGGAGAAGCTTCGAGACGAAGACGTCGTTATGGGATGC CTGCCGCCAAGGGACAAGCATCTTGATTACGTCCGAGCTCGTCGTGCTCGTGCAGCTGCAAAGGAAGCTGCTTCGAAAACAAAAGCCTCTTAA
AA sequence Show only first row Show all	>Lus10040761 pacid=23157748 polypeptide=Lus10040761 locus=Lus10040761.g ID=Lus10040761.BGIv1.0 annot-version=v1.0 MGEEIKLLGGSVSQFSRRIELVLKLKGLEFQYVEEDLANKSDLLLESNPVHKKIPVFFHNGKPIAESLIIIEYIDETWGSSYPILPKDPYDRAIARFWVK FADDKVWPTALKAYTGKDKEQKDGIEEFTLQIKYLEGELKGEEYFGGERIGFVDIAAFFILYWIQVMQEVVKIELMTKDKFPVIFKWMEKLRDEDVVMGC LPPRDKHLDYVRARRARAAAKEAASKTKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	0	1
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	1.7	0.9766
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	4.5	0.9526
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	6.1	0.9293
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	8.5	0.9487
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012582 [exp]	9.6	0.9364
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	9.9	0.9525
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	10.6	0.9498
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10001856 [exp]	12.4	0.9218
AT5G12340			unknown protein		Lus10036031 [exp]	13.6	0.9483
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	13.7	0.9455

Compare expression of checked genes

Lus10040761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.