Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 109 / 6e-31 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 108 / 9e-31 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29450 105 / 1e-29 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT5G62480 105 / 3e-29 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT2G29440 104 / 4e-29 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G74590 102 / 5e-28 ATGSTU10 glutathione S-transferase TAU 10 (.1) AT2G29480 100 / 2e-27 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29490 98 / 1e-26 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29470 97 / 4e-26 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT1G78340 94 / 4e-25 ATGSTU22 glutathione S-transferase TAU 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016470 [exp] 145 / 2e-45 AT2G29420 166 / 6e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 135 / 5e-41 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 134 / 8e-41 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 129 / 9e-39 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 124 / 1e-36 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 118 / 2e-34 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016468 [exp] 112 / 2e-33 AT2G29420 140 / 7e-43 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 114 / 6e-33 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 112 / 5e-32 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G104500 [exp] 107 / 6e-31 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.010G035500 [exp] 101 / 8e-28 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G032800 [exp] 99 / 9e-27 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G070900 [exp] 97 / 3e-26 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.004G196700 [exp] 97 / 4e-26 AT5G62480 229 / 9e-76 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) Potri.010G061800 [exp] 96 / 6e-26 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 96 / 7e-26 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.015G042000 [exp] 94 / 6e-25 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.011G140800 [exp] 93 / 8e-25 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.010G061200 [exp] 93 / 9e-25 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040762 pacid=23157861 polypeptide=Lus10040762 locus=Lus10040762.g ID=Lus10040762.BGIv1.0 annot-version=v1.0 ATGGAGGACGGAATCAAGCTACTTGGAACATGGGCTAGTCCGTTCAGCCGCAGGATCGAATTGGTCCTCAAACTGAAAGGCTTACAGTTCTACTATGTCG AAGAAGACCTCTTGAACAAGAGCGATCTTCTCCTCAACTCCAACCCAGTTCACAAGAAGATACCTGTCTTATTCCACAACGGCAAGCCAATCTCGGAATC CCTTGTCATCATCGAGTACATCGACGAAACCTGGGGATCAAGCTACTCAATTCTGCCGAAAGATCCCTACGACAGAGAGCCATTGCTCGCTTTTAGGCTA AGTTCGTTGACGAAAAAGTAA
AA sequence Show only first row Show all	>Lus10040762 pacid=23157861 polypeptide=Lus10040762 locus=Lus10040762.g ID=Lus10040762.BGIv1.0 annot-version=v1.0 MEDGIKLLGTWASPFSRRIELVLKLKGLQFYYVEEDLLNKSDLLLNSNPVHKKIPVLFHNGKPISESLVIIEYIDETWGSSYSILPKDPYDREPLLAFRL SSLTKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040762 [exp]	0	1
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10040763 [exp]	1.0	0.8961
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10005276 [exp]	4.7	0.8364
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10027907 [exp]	6.0	0.8683
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	8.0	0.8161
AT1G04985			unknown protein		Lus10015157 [exp]	9.8	0.8594
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	29.0	0.7981
AT5G42740			Sugar isomerase (SIS) family p...		Lus10007154 [exp]	38.3	0.8467
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	71.5	0.8213
					Lus10031227 [exp]	74.8	0.7806
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	92.0	0.7694

Compare expression of checked genes

Lus10040762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.