Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 224 / 6e-74 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 209 / 4e-68 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29490 202 / 1e-65 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29440 202 / 2e-65 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT2G29480 200 / 1e-64 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29450 193 / 7e-62 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29460 187 / 1e-59 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29470 184 / 1e-58 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT1G78380 172 / 6e-54 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G53680 172 / 1e-53 ATGSTU28 glutathione S-transferase TAU 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016469 [exp] 320 / 1e-111 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 315 / 5e-110 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 309 / 2e-107 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 249 / 1e-83 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 231 / 2e-76 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001640 [exp] 229 / 8e-76 AT2G29420 206 / 6e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001491 [exp] 215 / 1e-70 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10021102 [exp] 213 / 1e-69 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 212 / 3e-69 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070900 [exp] 205 / 1e-66 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 196 / 4e-63 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 193 / 8e-62 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.012G052200 [exp] 192 / 8e-62 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 192 / 1e-61 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.006G024200 [exp] 191 / 4e-61 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.015G042000 [exp] 183 / 6e-58 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.016G104500 [exp] 176 / 3e-56 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.011G140800 [exp] 178 / 4e-56 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 176 / 2e-55 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040764 pacid=23157846 polypeptide=Lus10040764 locus=Lus10040764.g ID=Lus10040764.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAATCAAGCTGCTTGGAACCTGGGCCAGTCTCTACAGCCGGAGAATCGAACTAGTCCTCAAACTCAAAGGATTACAGTTCCAATACGTGG AAGAAGACCTCTCCAACAAGAGCGATCTTCTCATCAACTCCAACCCAGTTCACAAGAAGATCCCTGTCTTCTTCCACAACGGCAAGCCGATTTCAGAGTC GCTAATCATTATACAGTACATCGATGAGACATGGGATCACACCCCAGTCCTCCTTCCTAAAGATCCTTGCCAAAGAGCTACTTCTCGATTCTGGGCGAAG TTCGTTGACGAAAAGGTCCTGCCGACGGCGGTCAAGGCTTTGATAGGGAAGGGCAAGGAACAAGAGAACGCAATGGAGGAATTCTCGCAGCAGATCAAGT TTCTGGAGGGAGAGTTGAAAGGGAAGGATTATTTCGGAGGGGAAACCATTGGGTTTGTCGACATTGCAGCCTTCTTCACCTTGCATTGGATTGGAGTGAT GCAGGAAGTGAAAGGTGGAGCAGATCAGTTGATGAATCAAGAGAAGTTCCCTGTAATATTTGAATGGCTGGAGAGGATGAACGACAGCGACGTCGTATTG GGATGCCTGCCGCCGAGGGAGAAGCATCTTGATTACATCCGAGCTGCCCGAGCCGCCAGAGAGAAGGCTGCTGCTTCCAAATCGCCATAG
AA sequence Show only first row Show all	>Lus10040764 pacid=23157846 polypeptide=Lus10040764 locus=Lus10040764.g ID=Lus10040764.BGIv1.0 annot-version=v1.0 MAEEIKLLGTWASLYSRRIELVLKLKGLQFQYVEEDLSNKSDLLINSNPVHKKIPVFFHNGKPISESLIIIQYIDETWDHTPVLLPKDPCQRATSRFWAK FVDEKVLPTAVKALIGKGKEQENAMEEFSQQIKFLEGELKGKDYFGGETIGFVDIAAFFTLHWIGVMQEVKGGADQLMNQEKFPVIFEWLERMNDSDVVL GCLPPREKHLDYIRAARAAREKAAASKSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	0	1
					Lus10033269 [exp]	1.0	0.9746
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	2.0	0.9559
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	2.4	0.9634
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	2.4	0.9565
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	4.0	0.9497
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	5.0	0.9531
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	5.3	0.9460
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	5.7	0.9482
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	6.3	0.9439
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	6.9	0.9468

Compare expression of checked genes

Lus10040764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.