Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53740 162 / 2e-49 Ribosomal protein L36e family protein (.1.2.3.4) AT5G02450 159 / 3e-48 Ribosomal protein L36e family protein (.1) AT2G37600 156 / 4e-47 Ribosomal protein L36e family protein (.1.2) AT2G42570 138 / 3e-37 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G30900 130 / 3e-34 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G29050 128 / 1e-33 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 125 / 1e-32 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT3G14850 124 / 3e-32 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G31110 124 / 5e-32 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G58600 116 / 8e-30 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040728 [exp] 218 / 3e-71 AT3G53740 159 / 5e-52 Ribosomal protein L36e family protein (.1.2.3.4) Lus10016466 [exp] 215 / 6e-70 AT3G53740 160 / 2e-52 Ribosomal protein L36e family protein (.1.2.3.4) Lus10016501 [exp] 216 / 8e-70 AT3G53740 160 / 9e-52 Ribosomal protein L36e family protein (.1.2.3.4) Lus10025342 [exp] 213 / 2e-69 AT3G53740 161 / 9e-53 Ribosomal protein L36e family protein (.1.2.3.4) Lus10024402 [exp] 213 / 2e-69 AT3G53740 161 / 9e-53 Ribosomal protein L36e family protein (.1.2.3.4) Lus10039559 [exp] 160 / 2e-45 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10019774 [exp] 144 / 3e-39 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 142 / 1e-38 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 134 / 6e-36 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066000 [exp] 187 / 3e-59 AT3G53740 173 / 2e-57 Ribosomal protein L36e family protein (.1.2.3.4) Potri.015G145800 [exp] 185 / 2e-58 AT3G53740 173 / 1e-57 Ribosomal protein L36e family protein (.1.2.3.4) Potri.012G142600 [exp] 185 / 2e-58 AT3G53740 173 / 1e-57 Ribosomal protein L36e family protein (.1.2.3.4) Potri.004G057000 [exp] 184 / 4e-58 AT2G37600 172 / 2e-57 Ribosomal protein L36e family protein (.1.2) Potri.003G201700 [exp] 151 / 4e-42 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 142 / 1e-38 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 139 / 8e-38 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 138 / 3e-37 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 135 / 3e-36 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 134 / 6e-36 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01158 [flax] [poplar] Ribosomal_L36e Ribosomal protein L36e
Representative CDS sequence Show only first row Show all	>Lus10040766 pacid=23157912 polypeptide=Lus10040766 locus=Lus10040766.g ID=Lus10040766.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCTCAGCCCAAGAGTGGTCTGTTCGTCGGACTGAACAAAGGACACATCGTCACCAAGCGCGATTTGCCGCCGCGTCCTTCCGATCGAAAGG GGAAAACTAGCAAGAGAGTGCATTTAGTGAGGAACCTTATAAGGGAAGTAGCTGGGTTTGCTCCGTATGAGAAGAGAGTTATTGAGCTGTTGAAGGTTGG AAAGGATAAGAGAGCTCTGAAACTTTCAAAGAGAAAGCTTGGTACCCACAAGAGGGGCAAGAAGAAGAGAGAGGAGCTCGCCACCGCACTCCGCAAGATG AGGGCTGCAGGAGGAGGCGAGAAGAAGAAGCGCATTTGCCGTATCCTTTCCGACTGCAAGACTCTAGTGAATATCCTCAATGGCTCCTGTGACCCTTTGG GATTGTGCCGCAAGAATTGCTTCCATGTTATCAGCATTACGTTACTCACCTCTGTTACGGCGGCGAATGGGTTTTCGACAACTCATCATCTTGTCCCTTT CCACAAAGCATTCGATTGCCGCAAGTATGGTAGAACTGATAATCAGTTCTTGAAATACTGGTGGCAATCGTCTCGATGCAACTTGCCTAGGTTTAATGAC ATTAGTTTCCTACGAAAGATGCGAGGGAAGAAGATTATGTTTGTGGGAGACTCGATGACCTTGAACCAATACAATTCATTGATTTGCCTTCTTCATGCGG CTGCCACAAACACCACCTACTCAACGAACAACGACTATGGAGTAACAGTGATGATGGACCTCAACCACTACTTGGTTGACATAAAAGAAAACAAGTTTGG GCACCGCCGCCGAGTCCTGATGCTCGATTCCATTAGCAGGGGAGACACGTGGAAGCAGATGGATCGAAACATCGTGCTTGAAAGAGCATTGGAAACTTGG AGGCATTGGGTCAACTCTGAAGTCAACGCTTCCAAAACTGCCGTGTTCTTTCAGGTGATAAATGCCGCCCATTACCATCGTTGCTGTTTGTCGGCTTTAG ACCCCCCGAATCTCTTCCTCCTCCGCCGCCTCAACTCCGCACCAGACCATCATTCTCATGCCACAGCATCTAAAGCTCATATGAGGATGAAACCGGCAAG GAAGGAGTTACTCGAAGGCTAA
AA sequence Show only first row Show all	>Lus10040766 pacid=23157912 polypeptide=Lus10040766 locus=Lus10040766.g ID=Lus10040766.BGIv1.0 annot-version=v1.0 MAPAQPKSGLFVGLNKGHIVTKRDLPPRPSDRKGKTSKRVHLVRNLIREVAGFAPYEKRVIELLKVGKDKRALKLSKRKLGTHKRGKKKREELATALRKM RAAGGGEKKKRICRILSDCKTLVNILNGSCDPLGLCRKNCFHVISITLLTSVTAANGFSTTHHLVPFHKAFDCRKYGRTDNQFLKYWWQSSRCNLPRFND ISFLRKMRGKKIMFVGDSMTLNQYNSLICLLHAAATNTTYSTNNDYGVTVMMDLNHYLVDIKENKFGHRRRVLMLDSISRGDTWKQMDRNIVLERALETW RHWVNSEVNASKTAVFFQVINAAHYHRCCLSALDPPNLFLLRRLNSAPDHHSHATASKAHMRMKPARKELLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53740			Ribosomal protein L36e family ...		Lus10040766 [exp]	0	1
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	4.2	0.7529
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	4.4	0.7935
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	7.9	0.7620
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10042695 [exp]	16.0	0.6967
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10012464 [exp]	16.2	0.7162
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	19.8	0.7288
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Lus10019500 [exp]	26.2	0.6869
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	27.0	0.7176
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	27.9	0.6859
AT1G16000			unknown protein		Lus10011478 [exp]	31.6	0.6887

Compare expression of checked genes

Lus10040766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.