Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53820 64 / 5e-13 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 64 / 1e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT5G43540 63 / 1e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G23130 58 / 3e-10 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 59 / 4e-10 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT2G42410 57 / 6e-10 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT5G06070 57 / 8e-10 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 53 / 2e-08 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G23140 50 / 1e-07 C2H2ZnF URO UPRIGHT ROSETTE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G68360 49 / 9e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024363 [exp] 65 / 9e-13 AT3G53820 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022204 [exp] 62 / 9e-13 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10021213 [exp] 63 / 2e-12 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10010870 [exp] 62 / 8e-12 AT3G09290 65 / 2e-13 telomerase activator1 (.1) Lus10021881 [exp] 62 / 1e-11 AT5G43540 67 / 3e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10041160 [exp] 62 / 1e-11 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10030967 [exp] 61 / 7e-11 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014755 [exp] 59 / 7e-11 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004705 [exp] 60 / 8e-11 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037100 [exp] 72 / 1e-15 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089301 [exp] 68 / 4e-14 AT3G53820 96 / 1e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 68 / 4e-14 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101300 [exp] 67 / 5e-14 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G164100 [exp] 64 / 1e-12 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221500 [exp] 63 / 3e-12 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041600 [exp] 63 / 3e-12 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 61 / 3e-11 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.008G163900 [exp] 59 / 2e-10 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 59 / 2e-10 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040767 pacid=23157679 polypeptide=Lus10040767 locus=Lus10040767.g ID=Lus10040767.BGIv1.0 annot-version=v1.0 ATGGATCATGATCACGACGAGGAGCACGAGATGATGGAGGAGGAAGCAGAAGGAGGAGCGTCGACCGGTTCGAGTCAGGGCGGGTCGACGAGGAGAGCAA CAAGGTCGTACGAGTGCACGTTTTGCAAGAGAGGGTTCTCAAACGCGCAGGCACTTGGCGGACACATGAACATCCACCGCAAGGACAAAGCCAAGCTCAA GCACAACAACAACTACTCTACTACTACTTCTTCTTCTTCTAACGAAGCTGTTGGATATCCGAATTTGGCCATGATTAATCCGACCAACACCTGGTCTTGG GTAGTCAACGACTCTACTCATGACCATGATTACTATCCTACTAGTAATTACAACTACAACTATATCGTGCCCACCGCGGCCCAACATCAAGTACTGCTCC CTAGTCTGTTTGTTCCTCAGCCGGCAGCAGGATCACTTGCTAATTATGATCATCAATTCGGCCATACGGCGGGGGATCATCGTAGGAGTAGTCGTCGGTC AAGTGATGGGGCTACTACGGAGCTGGACTTGGAGCTCCGATTGGGTACTATGGATCCTCATCATCATCATCATCATCATCGTCATCATCGTCATCGACAT CAGCCGGACCCGCCTATTGAGTCGTCGTCGACGACAATACTCGGTACCAGAAAGTTTTTTTGA
AA sequence Show only first row Show all	>Lus10040767 pacid=23157679 polypeptide=Lus10040767 locus=Lus10040767.g ID=Lus10040767.BGIv1.0 annot-version=v1.0 MDHDHDEEHEMMEEEAEGGASTGSSQGGSTRRATRSYECTFCKRGFSNAQALGGHMNIHRKDKAKLKHNNNYSTTTSSSSNEAVGYPNLAMINPTNTWSW VVNDSTHDHDYYPTSNYNYNYIVPTAAQHQVLLPSLFVPQPAAGSLANYDHQFGHTAGDHRRSSRRSSDGATTELDLELRLGTMDPHHHHHHHRHHRHRH QPDPPIESSSTTILGTRKFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10040767 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	9.1	0.8544
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	13.2	0.8518
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	13.6	0.8486
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	18.3	0.8448
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	20.1	0.8454
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	21.0	0.8396
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	22.0	0.8458
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	25.1	0.7961
AT1G71760			unknown protein		Lus10004010 [exp]	28.6	0.8163
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	28.9	0.7947

Compare expression of checked genes

Lus10040767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.