Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46780 467 / 3e-161 PTAC16 plastid transcriptionally active 16 (.1) AT3G18890 76 / 3e-14 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 49 / 5e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016502 [exp] 806 / 0 AT3G46780 533 / 0.0 plastid transcriptionally active 16 (.1) Lus10026321 [exp] 79 / 3e-15 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 78 / 6e-15 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 48 / 1e-05 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 45 / 6e-05 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037000 [exp] 561 / 0 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.001G244800 [exp] 520 / 0 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.004G150300 [exp] 82 / 2e-16 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 82 / 3e-16 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 82 / 3e-16 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 49 / 4e-06 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10040768 pacid=23157767 polypeptide=Lus10040768 locus=Lus10040768.g ID=Lus10040768.BGIv1.0 annot-version=v1.0 ATGGCTCCAACTCTCACCTCCAACTCATTCCACTTAACTACCCCATACCCACGCCCCACCTCCCTCCGCAGCAGCCACCGCCGCCTCGCAGTTTTCGCCA AGAAACCCAACAAGGAGAATGACAATTCAGAGTCCCCTGAATCTGCGGCGTCGGGGATTCAGAACCCTTTCCGCAATTTCAAATTCGGCAAGGTACCCGA TGCCAAGTCTTTGATTCCCGCGATGATCAGTAACCCTGCTGCAGGGTTGTCGTTTGGGAACCAGCGGAGGAAAGACCCAGGCACTGTCTTCGTCGCCGGC GCCACCGGTCAGGTTGGAGTTCGAATTGCTCGGACATTGCTGCGGGACGGGTTCAGTGTTAGAGCTGGGGTTGCTGAACTTGATGCCGCTCAGGAGCTTG CTCGTTTGGCTGCTGCTTATAAGATCATATCCAACGAGGAGTCCAAGCGGCTCAATGCTGTTGAATCCACTTTCGCCAGTGCTGAATCGATTGCCAAGGC AATTGGCAACGCTAGCAAAGTAGTGGTGACGATTGGACCTTATGAGAACGGTCCGAAATCCGAGGTTTCCACACTGGACGCATGGCAAGTAGTCCAGGCG GCGCAGCTAGCCGGAGTTGGCCATGTCGCCATTGTCTACGACGGAGGAAGCGCAGCTGGGGGTGCGTCTACTAACAATGTCCTAGACGGGTTCAAGATGT TCTTCAACAACCTCTTCTCGCAGTCTCAGCTGCTTAGCGTGCCCGAGTTCCTGCAGAAAGTGATCGAGACTGATGTCAGCTATACGTTCATAAACACGAG CTTGGCGGAGGATTATTCGCCCGAGAGTTCTTATAACGTTGTTGTCTCAACCGAAGGGAGCTCGGGTCCGGACGACTACAAAGTTGCCAAGGCAAAGATA GCAACACTGGTGGCAGATGTGTTCGCAAATACCTCCATAGCAGAAAACAAGGTGGTGGATGTGTTCACCAATCCATCAGCACCTTTAAGATCTGTGGACG AGCTATTCAGTGTGATCCCGGAAGATGGGAGAAGGAAAGCATATGCAGAGGCGCTCGAGAAGGCTAAAGCTGAGGAAGAGGCGAAAAGCGCAGCAGAGAA AGCTCGAGAAGCAGCTTTAACAGCTAAGAAGCTAGAGCAAGAAGTGAAGAAGCTGTCCGAGCAAGACGCGAAAGCCACAAGCCTAGCAGAAGAATCACAG AAGAAGGCGGAAGCTGCAGGGGTTTCGGTAGGGGACATGGTGGAGAAAGCTACAGCAGGGTTCTCATGGGAGAAACTGAGTTCCCAGCTAACAACAGCAG TTCAAAATGCTGGAGCAGAGATTCCTAAAGTACAGGTTGCTACCGTGAGGGGACAGGCAAAGGCTCGTTCTTTGCCTGTCCAGAAAGCGGTTGTGAAACC ACCTGTGGTTCCGAAATCGAAGCCCAAGAAGGCCGCGGTGCAGCCTGAACCTGTGCAGGCAGAGGAGAAGGAAGTGAGGAAGTTGTTTGGTGGGCTGTTT AAGCAAGAGACCATATACATCGATGATGATTGA
AA sequence Show only first row Show all	>Lus10040768 pacid=23157767 polypeptide=Lus10040768 locus=Lus10040768.g ID=Lus10040768.BGIv1.0 annot-version=v1.0 MAPTLTSNSFHLTTPYPRPTSLRSSHRRLAVFAKKPNKENDNSESPESAASGIQNPFRNFKFGKVPDAKSLIPAMISNPAAGLSFGNQRRKDPGTVFVAG ATGQVGVRIARTLLRDGFSVRAGVAELDAAQELARLAAAYKIISNEESKRLNAVESTFASAESIAKAIGNASKVVVTIGPYENGPKSEVSTLDAWQVVQA AQLAGVGHVAIVYDGGSAAGGASTNNVLDGFKMFFNNLFSQSQLLSVPEFLQKVIETDVSYTFINTSLAEDYSPESSYNVVVSTEGSSGPDDYKVAKAKI ATLVADVFANTSIAENKVVDVFTNPSAPLRSVDELFSVIPEDGRRKAYAEALEKAKAEEEAKSAAEKAREAALTAKKLEQEVKKLSEQDAKATSLAEESQ KKAEAAGVSVGDMVEKATAGFSWEKLSSQLTTAVQNAGAEIPKVQVATVRGQAKARSLPVQKAVVKPPVVPKSKPKKAAVQPEPVQAEEKEVRKLFGGLF KQETIYIDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	0	1
AT4G01150			unknown protein		Lus10012645 [exp]	1.4	0.9720
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	2.8	0.9557
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	3.5	0.9571
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	4.2	0.9544
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	4.6	0.9567
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	4.6	0.9539
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	4.7	0.9501
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	8.1	0.9544
AT3G45050			unknown protein		Lus10041331 [exp]	8.4	0.9503
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	9.2	0.9466

Compare expression of checked genes

Lus10040768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.