Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07470 314 / 4e-105 Transcription factor IIA, alpha/beta subunit (.1) AT1G07480 311 / 9e-104 Transcription factor IIA, alpha/beta subunit (.1.2) AT5G59230 62 / 3e-11 transcription factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016503 [exp] 569 / 0 AT1G07470 349 / 1e-117 Transcription factor IIA, alpha/beta subunit (.1) Lus10001563 [exp] 321 / 3e-108 AT1G07480 255 / 9e-83 Transcription factor IIA, alpha/beta subunit (.1.2) Lus10004981 [exp] 231 / 1e-73 AT1G07480 193 / 4e-59 Transcription factor IIA, alpha/beta subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244204 [exp] 392 / 4e-135 AT1G07470 343 / 4e-116 Transcription factor IIA, alpha/beta subunit (.1) Potri.009G036700 [exp] 390 / 3e-134 AT1G07470 358 / 1e-121 Transcription factor IIA, alpha/beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03153 [flax] [poplar] TFIIA Transcription factor IIA, alpha/beta subunit
Representative CDS sequence Show only first row Show all	>Lus10040769 pacid=23157824 polypeptide=Lus10040769 locus=Lus10040769.g ID=Lus10040769.BGIv1.0 annot-version=v1.0 ATGGCCGCATCCGCCACTACTAGCACCGTCTACATCCAGGTCATCGAAGACGTCGTCAACAAGGTCCGCGAGGAGTTCATCAACAATGGCGGCCCTGGCG AGGCCGTGCTTATTGAACTCCAAGGGATTTGGGAGATGAAGATGATGCAAGCGGGCGTTATATTGGGACCAATAGATCGTTCTTCATCTCAGAAGCAAGC AGCTGGTGGCCCTACTCCGGTCCATGACCTTAATGTACCATACGAAGGCACCGAAGAGTACGAGACTCCCACAGCTGAAATGCTCTTCACTCCTACACCA ATGCTGCAGACTCCACTACCTGCACATACCCCTTTACCAGGAAATGCCCAGACACCCTTGCCTGGAACTGCAGACAACTCCTCCATGTATAACATTCCTA CGGGAAATAGTAGCGAGTATCCTACTCCGATTAGTGAGACTGGTGGTAGCAATGGCCATACAGAGACTAAACCTGGTCATCCTAGCCCTTACATGCGAGT TAAGATTATTGCAGCTTATGAGGAAAGTCGAGATGAAGCTGACAGAAGAGCCCTTAATAATCCCCTGACTCAGGACTTCTTCACGAATTCTTCTGGAAAG CGGAAGCGTGATGATTTTCCTCCACCTTACAATAGTGGCGGGTACATACCCCAGCAAGATGGAGCCGGGGATTTCATCTTTGAGATTTCTCAGGGAGGAT CTGGGAAGATACCTCAAGTGGATGGTCCCGCTCCAGATCAATATGATGATGATATTCTTTCTACTCCCAATATATACAACTATCAAGGAGCGGCGAATGA AGAATACAACGTAAACACACCAGCTACCAATGAACTGCAGGCCACTACTCCTGCTTTGGTACCGCAAAACGATCCAGATGATGATGACGAGGACGAACCA CTGAATGAGGATGACGATGATGAGGAGGACTTGGATGAGGACGATGATCGTGAGGAGCTGAACACACAGCATCTGGTTCTGGCTCAGTTTGACAAGGTAA CCCGTACCAAGAGCAGATGGAAGTGCACTCTTAAAGATGGCATTATGCATATAAACAACAAGGACATTCTCTTCAACAAGGTGAATTCTGATAATAACTT TTACGACAGCGATTATCAGTTCTTATCGTTAACCTTGTACTGA
AA sequence Show only first row Show all	>Lus10040769 pacid=23157824 polypeptide=Lus10040769 locus=Lus10040769.g ID=Lus10040769.BGIv1.0 annot-version=v1.0 MAASATTSTVYIQVIEDVVNKVREEFINNGGPGEAVLIELQGIWEMKMMQAGVILGPIDRSSSQKQAAGGPTPVHDLNVPYEGTEEYETPTAEMLFTPTP MLQTPLPAHTPLPGNAQTPLPGTADNSSMYNIPTGNSSEYPTPISETGGSNGHTETKPGHPSPYMRVKIIAAYEESRDEADRRALNNPLTQDFFTNSSGK RKRDDFPPPYNSGGYIPQQDGAGDFIFEISQGGSGKIPQVDGPAPDQYDDDILSTPNIYNYQGAANEEYNVNTPATNELQATTPALVPQNDPDDDDEDEP LNEDDDDEEDLDEDDDREELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKVNSDNNFYDSDYQFLSLTLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	0	1
AT2G40070			unknown protein		Lus10002493 [exp]	3.2	0.7147
AT3G45400			exostosin family protein (.1)		Lus10003870 [exp]	5.3	0.7041
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	6.2	0.7363
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	12.0	0.7009
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	23.7	0.6641
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	24.1	0.6988
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	24.6	0.7073
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	31.2	0.6940
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	32.5	0.6411
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	35.7	0.6980

Compare expression of checked genes

Lus10040769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.