Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016504 [exp] 215 / 9e-72 AT1G07476 47 / 7e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036600 [exp] 66 / 6e-13 ND / Potri.001G244200 [exp] 44 / 1e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040770 pacid=23157614 polypeptide=Lus10040770 locus=Lus10040770.g ID=Lus10040770.BGIv1.0 annot-version=v1.0 ATGCATGTTCCTCTCATGGCACTGTGTAAATTACATAACATAACCGATCCCCTCTCCTTGCTTTCCGCTTTCCCAATACAGCCAAGAAAACTGAGCGTCT CTCTTCAGTTTTATCCTCACCACCTCTCATTAAAGCTCTTCAATTCCTTCCCATTCACCCCCATTCCAATCTGTGTCTGTCTGTCTGTCTGTAGTCTGTT TTTTGCCCACAGAGAGTCCTTTCACAGAAGCAGCATCATGCAGGGGGACAGCAGCAACGACATATTCCAAGCACAACCACCCAGGTTTCCACCACCATCG TCGTCGTCAAATAAGAGACTAGGGAAGCCACCCACAAGGCTACAGAACAGAGCCCCCAAACCTCTTGATCTCGATCAGGTTGTCGTCGGAAGTACCCCCA TTCCTCTCCTGTCGCCTTTGGTTCTGTCTCCTGCAGCTGCTTCTGTCCCTGCACATGATCATCATGAACCATCACCTGCTGCTGTGCATGACCAGTTCAT GTTCCCTGCAGTATCATCCGCCAGCAATGAGGGCGGAGGAGAGGTTCACAACAACATTTCAACAATGGCGAGTAGTGGTGGTTATGACGCCGAGCCATCG TCGTTGTTCACGTTCTTCCAAAACCAATGTGTACTTGTCGATCAAGCCCCAGTGAAACGGTGA
AA sequence Show only first row Show all	>Lus10040770 pacid=23157614 polypeptide=Lus10040770 locus=Lus10040770.g ID=Lus10040770.BGIv1.0 annot-version=v1.0 MHVPLMALCKLHNITDPLSLLSAFPIQPRKLSVSLQFYPHHLSLKLFNSFPFTPIPICVCLSVCSLFFAHRESFHRSSIMQGDSSNDIFQAQPPRFPPPS SSSNKRLGKPPTRLQNRAPKPLDLDQVVVGSTPIPLLSPLVLSPAAASVPAHDHHEPSPAAVHDQFMFPAVSSASNEGGGEVHNNISTMASSGGYDAEPS SLFTFFQNQCVLVDQAPVKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07476			unknown protein		Lus10040770 [exp]	0	1
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	39.5	0.7517
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	42.5	0.7484
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	49.9	0.6699
AT3G07510			unknown protein		Lus10025856 [exp]	62.0	0.7004
AT5G24090		ATCHIA	chitinase A (.1)		Lus10009216 [exp]	63.2	0.7299
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	63.4	0.7331
					Lus10031697 [exp]	68.9	0.7067
AT4G26890		MAPKKK16	mitogen-activated protein kina...		Lus10022951 [exp]	84.5	0.7135
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	84.7	0.7201
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	86.3	0.7187

Compare expression of checked genes

Lus10040770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.