Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59250 155 / 3e-44 Major facilitator superfamily protein (.1) AT5G17010 113 / 4e-29 Major facilitator superfamily protein (.1.2.3.4) AT3G03090 111 / 4e-28 ATVGT1 vacuolar glucose transporter 1 (.1) AT1G05030 47 / 5e-06 Major facilitator superfamily protein (.1) AT5G16150 45 / 2e-05 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G67300 44 / 5e-05 Major facilitator superfamily protein (.1.2) AT1G79820 42 / 0.0002 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G35740 41 / 0.0004 ATINT3 nositol transporter 3 (.1) AT2G20780 41 / 0.0005 AtPLT4 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016505 [exp] 313 / 9e-105 AT5G59250 758 / 0.0 Major facilitator superfamily protein (.1) Lus10009573 [exp] 105 / 7e-26 AT5G17010 691 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Lus10009158 [exp] 50 / 5e-07 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 49 / 1e-06 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10010501 [exp] 47 / 5e-06 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10018581 [exp] 45 / 3e-05 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 44 / 9e-05 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10023640 [exp] 42 / 0.0004 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10027026 [exp] 41 / 0.0004 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244100 [exp] 150 / 4e-42 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1) Potri.019G055600 [exp] 116 / 5e-30 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.014G060800 [exp] 49 / 2e-06 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.006G015300 [exp] 48 / 3e-06 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.004G152300 [exp] 44 / 7e-05 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 43 / 9e-05 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G151725 [exp] 41 / 0.0004 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 41 / 0.0004 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 41 / 0.0006 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.018G083200 [exp] 40 / 0.001 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10040771 pacid=23157947 polypeptide=Lus10040771 locus=Lus10040771.g ID=Lus10040771.BGIv1.0 annot-version=v1.0 ATGGCTAACAGTGCCTTACTCTCATCCTCTTCATTTCAACTCCCCACTCCCACAAAACCGCTAACCCGCACTTCCCAATTCCTCTGCAACTCCATCAACA ACAATGTCAACCACCACCAAACCCCAATTCCACTCACTTGCTTACATTCCAAGCAGAACCCAAAGCTTCCCTCCTCGCTCCAACAACCATCGCTGTTTGC CTCTCGAGGTCACAAGCCACCGAGGCTTAACGTCAGGTGTTCTGCCTCTGGAGAGGGTGCAGACTCGCTTGTGAATCGCGAGACTTCTGATGATTCCTTT TCTTGGTCATCCGTCATCTTGCCGTTTGTGTTCCCAGCATTGGGAGGATTGCTATTTGGGTATGACATTGGCGCCACTTCTGGTTCACCTGATCTAAGTG GGACAACTTGGTACGGTCTTTCAGCAGTGCAGCTTGGCCTTGTGGTCAGTGGTTCTCTTTACGGAGCACTTCTTGGTTCCATCCTTATTTATCCGACTGC AGATTTCCTGGGGAGGAGGCGCGAACTGATAATAGCAGCAGGGCTATATCTGCTCGGAGGAATCACCACAGCTTATGCACCAGGCCTCGGTGTTTTTTTG GCAGGACGCCTTCTCTATGGTCTAGGAATTGGCATGTTAAGCTTGGTGCTCCTACGTTACTTAAGTAGAAGAGAGGATACGAAAACTTGTTTCTAA
AA sequence Show only first row Show all	>Lus10040771 pacid=23157947 polypeptide=Lus10040771 locus=Lus10040771.g ID=Lus10040771.BGIv1.0 annot-version=v1.0 MANSALLSSSSFQLPTPTKPLTRTSQFLCNSINNNVNHHQTPIPLTCLHSKQNPKLPSSLQQPSLFASRGHKPPRLNVRCSASGEGADSLVNRETSDDSF SWSSVILPFVFPALGGLLFGYDIGATSGSPDLSGTTWYGLSAVQLGLVVSGSLYGALLGSILIYPTADFLGRRRELIIAAGLYLLGGITTAYAPGLGVFL AGRLLYGLGIGMLSLVLLRYLSRREDTKTCF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59250			Major facilitator superfamily ...		Lus10040771 [exp]	0	1
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	7.3	0.8904
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	9.4	0.8582
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	21.6	0.8395
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	25.7	0.8468
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	27.5	0.8564
AT1G77270			unknown protein		Lus10038311 [exp]	27.5	0.8514
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	29.7	0.8568
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	30.2	0.8556
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	32.9	0.8472
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	33.5	0.8405

Compare expression of checked genes

Lus10040771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.