Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59250 355 / 2e-120 Major facilitator superfamily protein (.1) AT5G17010 250 / 1e-80 Major facilitator superfamily protein (.1.2.3.4) AT3G03090 248 / 2e-79 ATVGT1 vacuolar glucose transporter 1 (.1) AT5G27360 99 / 1e-23 SFP2 Major facilitator superfamily protein (.1) AT5G27350 91 / 7e-21 SFP1 Major facilitator superfamily protein (.1) AT3G05150 89 / 8e-20 Major facilitator superfamily protein (.1) AT2G43330 87 / 3e-19 ATINT1 inositol transporter 1 (.1) AT1G08920 86 / 5e-19 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT2G48020 85 / 1e-18 Major facilitator superfamily protein (.1.2) AT3G05160 85 / 1e-18 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016505 [exp] 434 / 1e-151 AT5G59250 758 / 0.0 Major facilitator superfamily protein (.1) Lus10009573 [exp] 248 / 2e-78 AT5G17010 691 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Lus10029960 [exp] 91 / 1e-20 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 89 / 5e-20 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10033995 [exp] 86 / 3e-19 AT5G18840 411 / 9e-142 Major facilitator superfamily protein (.1) Lus10029629 [exp] 86 / 8e-19 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029962 [exp] 85 / 1e-18 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10031637 [exp] 85 / 2e-18 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 84 / 2e-18 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244100 [exp] 360 / 2e-122 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1) Potri.019G055600 [exp] 265 / 6e-86 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.014G136600 [exp] 89 / 5e-20 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027700 [exp] 88 / 1e-19 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 88 / 1e-19 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G032200 [exp] 86 / 6e-19 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.013G027500 [exp] 84 / 2e-18 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 84 / 4e-18 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 80 / 6e-17 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G135200 [exp] 79 / 1e-16 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10040772 pacid=23157773 polypeptide=Lus10040772 locus=Lus10040772.g ID=Lus10040772.BGIv1.0 annot-version=v1.0 ATGCAGCTGGGTTACTTTGTGGGTAGCTTTCAAATCGATGCAGTTGGAGGGTGGCGTTACATGTACGGTCTGAGAGCCCCTTTGGCTTTGCTGATGGGAC TTGGAATGTGGAGTCTTCCATCCTCGCCACGGTGGTTGCTTCTTAGGGCCGTTCAGGGTCAAGCACCTTTACAAGAGTACAAGGAGAAGGCCATTTTCGC ACTTAGCAGACTCCGGGGACGGCCTTTAGGTGATAAAGTTTCCGAAAAGGAAAGAGAGAGCAACCTTAGCTCACTCAAGTCTAGCTATGATGAGGAATCT CAGGGGAATCTCCTAGAGGTGTTTCAAGGGTCGAGTTTGAAAGCCTTCATTATTGGTGGCGGCTTGGTGCTTTTCCAACAGATAACTGGGCAACCAAGTG TTCTGTATTACGCAGGTTCGATTCTTCAGTTTCTGATGACAGGGGTTGCTGTTCTAAAAGTAGATGATCTCGGACGAAGACCTTTGCTGATTGCTGGCGT CAGTGGCATTGTGTCGTTCGGGCCAATCAGTTGGCTAATGGTGTCCGAAATTTTCCCTCTTCGTACCAGAGGGAAGGGAATCAGTCTCGCAGTTCTCACT AACTTCGGCTCGAACGCCATAGTAACATTTGCATTCTCACCATTGAAGGAGTTGCTTGGCGCTGAGAATCTTTTCCTTCTTTTTGGTGCAATAGCTATCG TAGCACTCTTGTTCACAATCACGATCGTCCCAGAGACTAAAGGCTTGAGCTTGGAAGAAATCGAGTCAAAAGTCTTGAAGTGA
AA sequence Show only first row Show all	>Lus10040772 pacid=23157773 polypeptide=Lus10040772 locus=Lus10040772.g ID=Lus10040772.BGIv1.0 annot-version=v1.0 MQLGYFVGSFQIDAVGGWRYMYGLRAPLALLMGLGMWSLPSSPRWLLLRAVQGQAPLQEYKEKAIFALSRLRGRPLGDKVSEKERESNLSSLKSSYDEES QGNLLEVFQGSSLKAFIIGGGLVLFQQITGQPSVLYYAGSILQFLMTGVAVLKVDDLGRRPLLIAGVSGIVSFGPISWLMVSEIFPLRTRGKGISLAVLT NFGSNAIVTFAFSPLKELLGAENLFLLFGAIAIVALLFTITIVPETKGLSLEEIESKVLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	0	1
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10020520 [exp]	3.0	0.8046
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	3.0	0.8509
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	7.2	0.7932
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	10.5	0.8171
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	11.2	0.7733
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	16.5	0.7437
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	19.5	0.7465
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	21.2	0.7708
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	26.5	0.7489
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	28.3	0.7568

Compare expression of checked genes

Lus10040772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.