Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 561 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 553 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 543 / 0 RLK receptor lectin kinase (.1) AT3G45440 542 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 537 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 536 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 536 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT5G60280 536 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 527 / 8e-180 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 522 / 5e-178 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016506 [exp] 1169 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 720 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 716 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 674 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 674 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 600 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 597 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 588 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 583 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036300 [exp] 667 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 659 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 659 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 659 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 658 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 657 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 628 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 602 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 598 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 593 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10040773 pacid=23157664 polypeptide=Lus10040773 locus=Lus10040773.g ID=Lus10040773.BGIv1.0 annot-version=v1.0 ATGGAGTTCATCCAATTCCTCCTCCTTCTAATCTCCACACTTCCATTCACCAAACCAGAACAGTTCATCTTCAACGGATTCAACAACAATGGAACCAACA ACCTCAAACTCAGCTTCGACGGAGAAGCAGCAGAGATTCAACCCACCGGCCTCCTCCGTCTCACAGATTCATCACCTCTCCAAATGGGCCACGCTTTCTA CCCTTCGCCAATCAACTTCCCAAACTCTTCTTCCTTATCCTTCTCCACAAATTTCATCTTCGCCATGCTCCCACAGTCCCCAAACCTCGGAGGCCACGGA TTAGCATTCTTCCTATCTCCAACCGTTGATTTCACACAGGCAGTCGCCAGCCAACACTTGGGGCTATTCAACGCCACGACCAACGGCGTTGCGGCCAACC ACGTGTTAGCAATTGAGTTTGACGCCATGAGGAGTCCTGAGTTTCAGGACATTGACAACAACCATGTAGGAGTTGATATCAACAGCTTGATATCCATTGA CTCTGCTCCTGCTTCTTTTATAAACCCACCAGATGGTAAAAATCTGACCTTGCAGATGTTGAGTGGGAATCCTATCAGGGTTTGGATTGATTATAATGAT ACCCAGAAGGTGATTAATGTTACCTTGGGTCCGATTGATGGTATCAGGCCGGAAAGATCGTTGCTTTCGACGAATGTTGACCTAAGTGATGTGATTTCTG AGTCCATGTATGTGGGGTTTTCTGCTGCAACTAGTACTGTGACTAGTGAGCATTACATTCTTGGGTGGAGCTTTAGTAAAGGTGGGAAGGCTGAGGAGCT TGATGTCTCTAAGCTTCCAAAGCTTCCACCTTTGAAGAAGGGAAAGAGGAAAAGAGTTGGGTGGATGATCATAGTTTTTCCTGTGCTGGGTTTGGTTCTG TTGGGTTTGGTTTGGGGGAGTTTGGTTTGTTGGCAGAGGAGGAAGTTGTATGCTGAAGTGTGTGAAGAATGGGAGAAGGAGTATAATCCTCAGAGATTCA CTTACAAGAATCTTTATTTAGCAACGGGCGGTTTCAAGGAGAAGCAGTTTCTCGGAGTCGGAGGGTTTGGGAAAGTTTACAAGGGAGTTCTTCTGTCTTC TGGTATGGAGGTTGCGGTGAAGAGAATCAACCACGATTCGAGGCAAGGGATGAAGGAGTTCGTGGCAGAAATCGTTAGCATTGGAAGGTTAAGGCACAGG AACTTGGTGCAGTTACTTGGATACTGTAGGAGGAAAGGTGAACTCCTGCTGGTGTATGATTACATGCCTAATGGAAGCCTTGATAAGCTGCTGTTTTCTT CGAGTGACGATGAAAACTCGAAAACGAGTCTAAATTGGCCTCAGAGGCAGAAGATCATCAGAGGGGTAGCCTCGGCGCTTTTGTATCTCCATCAGGAATG GGAGCAAGTTGTCATTCACAGGGACATCAAGGCTAGCAATGTGCTTTTGGATGCTGATATGAACGGAAGATTAGGAGATTTCGGTCTTGCTAGATTGCAT GACCACGGTACGAATTCTCACACCACTCAAGTGGCAGGAACTGTGGGCTACTTGGCTCCTGAGCTCACTAGGCTAGGGAAGGCCACAACTAGCACTGATG TGTTTGCATTTGGGGTGTTCATGTTGGAGGTGGTCTGCGGGAGACGGCCAGTGGATATGGAAGCGGTTTCCGATGAAGTTGTTCTGGTGGATTGGGTGGT TAAGTGCTGGCAAGGAGGGGACATTCTTAGTGCAGTGGATCCTAGGTTGCAGGAAGGGAGTTATGACAGAGAGGAAATGGAGTTGGTCATGAGATTAGGG CTTCTGTGTTCGCATACTGTGTCGGCATTAAGGCCTAGTATGAGGAAAGTGATGCAGTACCTGGATGGTGATACAAGTTTGCCGGAGATCTCCCTGGAGA GTGCTGGAGTTGGGAACTTCCCTTGCTACAGTGAAAGATCTGATCTTTTCTTGTCGAATTTTACTGCTAGTAGAGCTTCCATGAATTCCTTCTGCAGTCA GGATTCAATCATCACAACGGGTCGTTAG
AA sequence Show only first row Show all	>Lus10040773 pacid=23157664 polypeptide=Lus10040773 locus=Lus10040773.g ID=Lus10040773.BGIv1.0 annot-version=v1.0 MEFIQFLLLLISTLPFTKPEQFIFNGFNNNGTNNLKLSFDGEAAEIQPTGLLRLTDSSPLQMGHAFYPSPINFPNSSSLSFSTNFIFAMLPQSPNLGGHG LAFFLSPTVDFTQAVASQHLGLFNATTNGVAANHVLAIEFDAMRSPEFQDIDNNHVGVDINSLISIDSAPASFINPPDGKNLTLQMLSGNPIRVWIDYND TQKVINVTLGPIDGIRPERSLLSTNVDLSDVISESMYVGFSAATSTVTSEHYILGWSFSKGGKAEELDVSKLPKLPPLKKGKRKRVGWMIIVFPVLGLVL LGLVWGSLVCWQRRKLYAEVCEEWEKEYNPQRFTYKNLYLATGGFKEKQFLGVGGFGKVYKGVLLSSGMEVAVKRINHDSRQGMKEFVAEIVSIGRLRHR NLVQLLGYCRRKGELLLVYDYMPNGSLDKLLFSSSDDENSKTSLNWPQRQKIIRGVASALLYLHQEWEQVVIHRDIKASNVLLDADMNGRLGDFGLARLH DHGTNSHTTQVAGTVGYLAPELTRLGKATTSTDVFAFGVFMLEVVCGRRPVDMEAVSDEVVLVDWVVKCWQGGDILSAVDPRLQEGSYDREEMELVMRLG LLCSHTVSALRPSMRKVMQYLDGDTSLPEISLESAGVGNFPCYSERSDLFLSNFTASRASMNSFCSQDSIITTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10040773 [exp]	0	1
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	3.6	0.8224
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	3.7	0.8003
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10028862 [exp]	3.9	0.7924
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	5.5	0.7982
AT5G50000			Protein kinase superfamily pro...		Lus10002368 [exp]	14.5	0.7158
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	15.6	0.7926
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	16.7	0.7612
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	20.3	0.7395
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	20.7	0.7658
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	23.0	0.7749

Compare expression of checked genes

Lus10040773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.