Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 677 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 654 / 0 RLK receptor lectin kinase (.1) AT4G02410 639 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 612 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 611 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 610 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 610 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT5G60280 607 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 604 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 604 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016507 [exp] 1254 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 987 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 983 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 793 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 775 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 669 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 666 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 655 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 652 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036300 [exp] 753 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 749 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 748 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 740 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 738 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 731 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.009G036100 [exp] 729 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 723 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 719 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 719 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10040774 pacid=23157579 polypeptide=Lus10040774 locus=Lus10040774.g ID=Lus10040774.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTTTACTGTGAGGAAGAGATTCCTGCTCCGTACACTTATCCTCCATTTCATTTCCGCAGCACCTTTCTTCTCCAATTCCCAAACTCCTC CTGTAACTGATCAGTTCACCTTCAACGGATTCAACCGGGCAAACCTGACATTCGACAACCAGGCCAAAATCCTCCCCAACGGTTTACTCCAGCTGACGAA TTTCACCGAGCTCATCATCGGACATGCCTTCTACCACCAGCCGTTCAAATTCACCCCTTCTGAATCGCTTTCCTTCTCCACAACCTTCGTCTTCGCTATG GTACCGCAGTCTGCCAACACCGGCGGCCACGGCATCGCCTTCACGATTTCTCCGACTACTGATTTTAGTCAAGCAGTCGCCAGCCAGCACTTGGGGCTGT TCAATTCTACGAACTTGGGGAATTCTTCCAACCACGTGGTTGCAGTCGAGCTCGACGCTATGCGTAGCCCGGAGTTCCAGGATATCGACGACAACCACGT CGGCGTCGACCTCAACACGTTGATTTCCACCGTCTCCGCCACCGTCTCCTATGTCTCCGACCAGGACGGCCGAAACAGAACCCTTCGGTTGCTGTCCGGC GACCGGATGCAGGTCTGGATCCGGTACGATGATTCGAACAAGAGGATGAACATCACCGTTGCTCCGTTTGGGGTTTCGAAACCTAGACGCCCTCTGATAT CGACTCCGCTTGATTTGTCGTCCTACCTCGTGGAATCGATGTACGTCGGATTCTCTTCCTCGACGAGCACTGTCACCAGCGAGCAGTACATACTCGGATG GAGTTTCCGCAAAGGAGAAAGAGAAGCGCCGTCGTTAGATCTCCGTTCTCTGCCGGTCACTCCGCGGCCAAAGAAACCGAGCAAGAAATTAGGAACGGCT GCGACGATCGTTCTGATAATGTTAGCAATCTCCCTGGCCGCAATCGCTATAGCAGCTTACATCCTCCGATTGAGAAGATACAGAGAGCTGACTGAGGATT GGGAGAAAGAATACAATCCGCAGAGACTCTGTTACAAAGATCTATACAGAGCGACTCACGGATTCAAGGAGAAGGAAGTTCTCGGATCGGGAGGATTCGG AAAAGTCTACAGAGGTATTTTACCGACATCCAAAATTGAAGTTGCAGTGAAGCGAATTTCTCACGATTCGAGGCAAGGGATGAAAGAATTCGTAGCCGAA ATCGTCAGTATGGGAAGATTGCGCCATAGAAACTTGGTTCATCTTTTAGGTTACTGCCGAAGGAAAGGCGAATTGCTTCTGGTCTACGATTACATGCCTA ACGGAAGTCTAGACAAATACCTATTCGATCCGGCGACAATGGCGACGACGTTGAACTGGCAGCAGAGATTCAAGATCCTGAGAGGAGTAGCTTCGGGACT CCTCTACCTCCACGAAGAATGGGAGCAGATCGTCCTCCACCGCGATATCAAAGCAAGCAACATCTTACTCGACGCGGATCTGAACGGCCGGTTGGGAGAT TTCGGGCTCGCCAGGCTGTACGACCACGGTACGAATCCCCAAACGACTCACGTAGTGGGGACCGTTGGATACCTAGCTCCAGAGCTTTCCCGGCTAGGGA AGGCGACAACGGCCACCGACGTCTACGCGTTCGGAGTCTTTATGCTGGAAGTGGCCTGTGGGAAGAGGCCGATCGACACGACGGCGATCCCCGAAGAGAT GATACTGGTGGATTGGGTGATCGATTGCTGGAAGAGAGGCGAGATCTTGGAAGCGAGCGATCCGAAATTAGGAGGGGATTATTCGAAGGAAGAGATGGAG ATGGTGATGAAATTGGGGCTTTTGTGCTCTCATAACATGGAGGCGTTTCGGCCGAGTATGAGGCAGGTGATGCAGTATCTCGACGGAGATTCGAACTTGC CGGAGATTCCGCTTGAGAGCTCCGGGATCGGAGCGTTCTCGATCGGAGGGAGGGAGACAGCGGAGTTTGTGATGTCGTTTCCTTCTTCCGTTGGTAAGGA TTACACTACGGTTAATACTATGTCGAGTACTGATTCTATTCTTCATTCCGGCCGGTAG
AA sequence Show only first row Show all	>Lus10040774 pacid=23157579 polypeptide=Lus10040774 locus=Lus10040774.g ID=Lus10040774.BGIv1.0 annot-version=v1.0 MAAAFTVRKRFLLRTLILHFISAAPFFSNSQTPPVTDQFTFNGFNRANLTFDNQAKILPNGLLQLTNFTELIIGHAFYHQPFKFTPSESLSFSTTFVFAM VPQSANTGGHGIAFTISPTTDFSQAVASQHLGLFNSTNLGNSSNHVVAVELDAMRSPEFQDIDDNHVGVDLNTLISTVSATVSYVSDQDGRNRTLRLLSG DRMQVWIRYDDSNKRMNITVAPFGVSKPRRPLISTPLDLSSYLVESMYVGFSSSTSTVTSEQYILGWSFRKGEREAPSLDLRSLPVTPRPKKPSKKLGTA ATIVLIMLAISLAAIAIAAYILRLRRYRELTEDWEKEYNPQRLCYKDLYRATHGFKEKEVLGSGGFGKVYRGILPTSKIEVAVKRISHDSRQGMKEFVAE IVSMGRLRHRNLVHLLGYCRRKGELLLVYDYMPNGSLDKYLFDPATMATTLNWQQRFKILRGVASGLLYLHEEWEQIVLHRDIKASNILLDADLNGRLGD FGLARLYDHGTNPQTTHVVGTVGYLAPELSRLGKATTATDVYAFGVFMLEVACGKRPIDTTAIPEEMILVDWVIDCWKRGEILEASDPKLGGDYSKEEME MVMKLGLLCSHNMEAFRPSMRQVMQYLDGDSNLPEIPLESSGIGAFSIGGRETAEFVMSFPSSVGKDYTTVNTMSSTDSILHSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	1.0	0.9311
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	1.7	0.9057
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	2.0	0.9102
AT5G10530			Concanavalin A-like lectin pro...		Lus10007074 [exp]	3.9	0.8817
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	4.1	0.8402
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	4.5	0.8876
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	4.6	0.8573
AT3G55390			Uncharacterised protein family...		Lus10001709 [exp]	6.6	0.8509
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	10.0	0.8540
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	11.8	0.8451

Compare expression of checked genes

Lus10040774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.