Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46740 470 / 3e-160 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT1G35860 283 / 8e-93 TOC75-I translocon outer membrane complex 75-I (.1) AT4G09080 166 / 2e-47 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1) AT5G19620 58 / 7e-09 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G44160 42 / 0.0007 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004978 [exp] 505 / 2e-176 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10001566 [exp] 503 / 2e-173 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10016508 [exp] 429 / 3e-144 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10031839 [exp] 66 / 3e-11 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10031272 [exp] 61 / 9e-10 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072800 [exp] 478 / 2e-163 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G158100 [exp] 477 / 5e-163 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G204900 [exp] 64 / 9e-11 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.001G019000 [exp] 62 / 2e-10 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.009G017100 [exp] 46 / 3e-05 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 44 / 0.0002 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10040775 pacid=23157843 polypeptide=Lus10040775 locus=Lus10040775.g ID=Lus10040775.BGIv1.0 annot-version=v1.0 ATGTCCTCCTTCGCCGGTTCCGCCAACTTCCTCGTCAAGTCTCCGATCACCTCCCACCGCAATTCACGCACCGCCACTCCTTCTCCACGCTCCGCCTTCT TCAAATCTACCTTCACTCCTTCATCTTCATCATCATCCTCTCCACTAAACCCTAAACCCTCCACTATCAAAGAGGTTGTTTGTGAGGTGGTTGAAGGAGA TATTACTCAGCTGAGCATTCAGTTTATTGATAAACTTGGCCATGTGGTTGAAGGGAACACTCAGCTTCCTGTTGTCCAGAGAGAATTGCCTAGGAAGTTG CGACCAGTAAATGTGTTCAACATTGAAGATGGGAAGAGAGCTCTGAAGAATATAAATGCATTGGGTTTGTTTTCAAACATTGAAGTGAATCCAAAGCCTG ATGAGAAGAGAGAAGGAGGGATCATTGTTGAGATTAAGCTCTTTAAAGAGTTAGAGGCGAAGTCGGCTGAAGTTAGTACGGAGTGGAGCCTTGTTCCTGG ACGTAGTGGATGGCCCACGTTGATTAAAATCCAGCCTGGTGGAACTGTTTCTTTTGAACACCGGAATATCAAAGGGCTAAATAGGTCAGTATCGGGCTCA TTAACCACAAGCAATTTCTTTTCGCCTCAGGATGATCTTGCCTTTAAGCTTGAATATGCACATCCATATCTTGATGGTGTAAAGAGTTCTCGCAATCGTA CTCTTCGGACAAGCTGCTTTAACAGCCGAAAACTTAGTCGAGTTTTTACTGGTGGACCGGGAGTTGACGAGGTTCCTCCAATATGGGTTGATCGAGCCGG CATGAAAATTAACGTTACAGAGGTCAATATCACTCGCGACAACACGAAATTTGTCAATGGTGCTCTAGTTGGTGAAAGGAATGTCTTTCAGGTGGATCAA GGCCTTGGCATTGGCAGCAAATTCCCGTTCTTCAACCGTCCCCAGCTGACAGTTACGCAGTTTATTCCGCTACTAAAGGTGGAGGAAGGTGCCGGTAAAC AGCCACCACCTATTCTAGTTCTTAATGGTCATTACAGTGGATGTGTGGGAGATCTTCCGAGTTACGATGCTTTTACACTGGGCGGACCTTATTCCGTGAG AGGTTACAACATGGGCGAGCTTGGAGCAGCATGA
AA sequence Show only first row Show all	>Lus10040775 pacid=23157843 polypeptide=Lus10040775 locus=Lus10040775.g ID=Lus10040775.BGIv1.0 annot-version=v1.0 MSSFAGSANFLVKSPITSHRNSRTATPSPRSAFFKSTFTPSSSSSSSPLNPKPSTIKEVVCEVVEGDITQLSIQFIDKLGHVVEGNTQLPVVQRELPRKL RPVNVFNIEDGKRALKNINALGLFSNIEVNPKPDEKREGGIIVEIKLFKELEAKSAEVSTEWSLVPGRSGWPTLIKIQPGGTVSFEHRNIKGLNRSVSGS LTTSNFFSPQDDLAFKLEYAHPYLDGVKSSRNRTLRTSCFNSRKLSRVFTGGPGVDEVPPIWVDRAGMKINVTEVNITRDNTKFVNGALVGERNVFQVDQ GLGIGSKFPFFNRPQLTVTQFIPLLKVEEGAGKQPPPILVLNGHYSGCVGDLPSYDAFTLGGPYSVRGYNMGELGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	6.2	0.7752
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	15.4	0.7712
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	17.1	0.7706
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	22.4	0.7083
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	25.8	0.7236
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	27.0	0.7129
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	33.7	0.7244
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	34.0	0.7122
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	34.2	0.7337
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	34.3	0.6972

Compare expression of checked genes

Lus10040775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.