Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 258 / 1e-76 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 241 / 3e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 240 / 9e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 244 / 2e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49710 239 / 5e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 238 / 6e-69 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 232 / 5e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 234 / 7e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 235 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G33680 230 / 8e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016509 [exp] 927 / 0 AT1G11290 361 / 1e-114 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040997 [exp] 669 / 0 AT4G13650 370 / 8e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 260 / 3e-77 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 249 / 2e-73 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 248 / 4e-73 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 249 / 1e-72 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 245 / 2e-72 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 244 / 4e-72 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031504 [exp] 242 / 8e-72 AT3G05340 754 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035100 [exp] 556 / 0 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 274 / 7e-81 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 252 / 4e-75 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 253 / 3e-74 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 249 / 3e-73 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 251 / 5e-73 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 248 / 6e-73 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 248 / 6e-73 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 245 / 9e-72 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 243 / 7e-71 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040776 pacid=23157718 polypeptide=Lus10040776 locus=Lus10040776.g ID=Lus10040776.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCTTGCGAGAGTGGCGGATTAGATAGCGCCATTTCATGGCGCTATGGCATTGAACTTGCGTTGTTTCGTTGCATCTTGGAAATCCGCCGGC GGCCAACTGATTCCCGAGCTCCAGCAAACTCTCCCCGCCACTTCACCGGCGAAAATTTACAACGTTCTAGCCGCATTGAACGCTTCGATTGCGGCTGCGA GAAGGATCGGCTTTCAGCTGAGCTGGAACTACTTGCCGGGCTTCAGAATCCTCCGTCTTTAACCGATGCTTACTTCATCAACAAAGCCGTCTCCTTCTGC GCCAAATCCCCTTCCTTCTTCTTCACGGTTGTAGATATGTATACTAAATATGGAGACATCACGGCTGCCCACCAAATGTTCGACGAAATGCCGGTGAGAA ATTCCGTCTCTTGGAATTCGCTTATTTCTGGCTATCTGGATGCCCATGTCCCGGAAATCGCACTTCGATTGTTCGTCGAGATGCTCCGAGTCGGAACATC CGTTTCGCCATTTAACCTTTCCAGCTGTCTGGTGGGTTGTTCACACTTGGAGGACAAGAAGCTCGGAGAGCAGCTTCATGGAGTCAGTTCAAAAACAGGG ATTGATCATCATTTCGTTGTGGGAACCGTTCTGATCGATATGTACTCAAAATCCGGTAATGTCAATAACTCGAAACGAGTTTTCGACAGTATAGTGGACA GGAATGTCACTACCTGGACATCTATGGTTACAGCATATTCACGGAACAAAAATCCTCGCGAAGCAATGATGTTAGCTAGGGAGATGATGCGATCTGGCTC GAAACCAAATAGTCTGACGTATAATAGCCTACTGAGTTCATTTTCTGGTCCGGATTACTTAGTCTACTGCAAGCAAGTTCATTGTTGCATAATTCGTCAA GGTTTCGAATCGAACGAGTATTTATCTGCTACTCTTACTACTGTATATTCGAAATGTAGTAACACCTTGGATGATTTTGTTAAGGTCTGCTCCGGTATTA CAATACGCGACCAAGTATCGTGGAACGCCATGATTGCTGGTTACTGCAATCTTGAATGTGGGAACGAAGCTCTCAGGTGTTTTGGTGAAATGAGGCGGGC TGGAATGGACGGAGATCTCTACGCGTTTACGAGTCTGTTGGGAGCGATCGGGGATAGTAGTTCGTTTCTCGAGGAAGGAAGAGAGGTGCATGCTGTCATT TCCAAGACTGGGTACGCTTCGAGTTTGAGCGTTCAGAACGGTATTGTTTCCATGTACGCGAGATGCGGTGCTATGGACGAATTGAAGAGGATGTTCAGGT TGATGCCGAAGCATGATGTCATTTCGTGGAACTCGCTTCTAACGGGTTGTGCTCACCATGGATACGGTAACGAAGCTGGGGAACTATTCGAAGAAATGAG AAAGCCGGAAAGACAAAACCCGATGCCACCAGTTTCCTTGCTGTGTTATCCGCGTGCAGCCATACCGCATTATGCTAGCGTCGTCGACATTTTTGGCCGC GCTGGACATCTAGACGAGGCTGAAAGTTTTATCGGCAGCATGCCTATAGAACCTGGTCCTTCGGTCTATAAGGCTTTGCTTAGTGCTTGTATGTTACGCG GAAACGTGGAGGTTGCGGAACGTTCTGCACAGAAGCTTGTGAATCTTTGGCCTGACGATAGCGCGACTTACGTTATGCTATAG
AA sequence Show only first row Show all	>Lus10040776 pacid=23157718 polypeptide=Lus10040776 locus=Lus10040776.g ID=Lus10040776.BGIv1.0 annot-version=v1.0 MGRACESGGLDSAISWRYGIELALFRCILEIRRRPTDSRAPANSPRHFTGENLQRSSRIERFDCGCEKDRLSAELELLAGLQNPPSLTDAYFINKAVSFC AKSPSFFFTVVDMYTKYGDITAAHQMFDEMPVRNSVSWNSLISGYLDAHVPEIALRLFVEMLRVGTSVSPFNLSSCLVGCSHLEDKKLGEQLHGVSSKTG IDHHFVVGTVLIDMYSKSGNVNNSKRVFDSIVDRNVTTWTSMVTAYSRNKNPREAMMLAREMMRSGSKPNSLTYNSLLSSFSGPDYLVYCKQVHCCIIRQ GFESNEYLSATLTTVYSKCSNTLDDFVKVCSGITIRDQVSWNAMIAGYCNLECGNEALRCFGEMRRAGMDGDLYAFTSLLGAIGDSSSFLEEGREVHAVI SKTGYASSLSVQNGIVSMYARCGAMDELKRMFRLMPKHDVISWNSLLTGCAHHGYGNEAGELFEEMRKPERQNPMPPVSLLCYPRAAIPHYASVVDIFGR AGHLDEAESFIGSMPIEPGPSVYKALLSACMLRGNVEVAERSAQKLVNLWPDDSATYVML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10040776 [exp]	0	1
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	14.1	0.8215
AT5G40520			unknown protein		Lus10027029 [exp]	18.8	0.8207
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	40.1	0.8026
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	42.1	0.7965
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	47.5	0.8021
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	49.4	0.8078
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034867 [exp]	53.2	0.7958
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	57.6	0.7813
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	59.5	0.7997
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10025473 [exp]	62.9	0.7888

Compare expression of checked genes

Lus10040776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.