Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59600 96 / 6e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 77 / 2e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 74 / 4e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 70 / 7e-15 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39680 69 / 3e-14 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 68 / 3e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 68 / 4e-14 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 67 / 1e-13 unknown protein AT3G57430 66 / 2e-13 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 66 / 3e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016511 [exp] 234 / 1e-75 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033946 [exp] 76 / 9e-17 AT4G18750 410 / 1e-132 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 72 / 2e-15 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000119 [exp] 71 / 2e-15 AT4G18750 149 / 5e-40 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003383 [exp] 68 / 8e-15 AT2G21090 145 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10001483 [exp] 69 / 3e-14 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004303 [exp] 67 / 3e-14 AT2G21090 146 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038431 [exp] 65 / 4e-13 AT4G20770 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018543 [exp] 64 / 8e-13 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243800 [exp] 140 / 4e-40 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 72 / 2e-15 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G212000 [exp] 70 / 6e-15 AT1G23450 743 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 70 / 8e-15 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G087400 [exp] 70 / 9e-15 AT4G08210 889 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G208000 [exp] 69 / 1e-14 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 69 / 2e-14 AT3G22690 1050 / 0.0 unknown protein Potri.017G091600 [exp] 69 / 2e-14 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G052300 [exp] 69 / 2e-14 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G207500 [exp] 68 / 3e-14 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040778 pacid=23157577 polypeptide=Lus10040778 locus=Lus10040778.g ID=Lus10040778.BGIv1.0 annot-version=v1.0 ATGCTTGCTCTTATTAGACCCAGAGTTTTCAGGGACGAACGCAAATTGAGCTTCTACACCGGCGGCCACTCTCGGTTTCATTCATCCCCAGAAGCGTACG GGGAGATCATCAGAACCTACTCCCGCCGTCGATCGTTACGCAAAGGCAAAGCACTTCACGCTCACCTGATCGTTAACGGATCTGCCCGCCTCACATATCT CGCAGAAAAGCTCCTGTCTTTCTACACCGAGTGTAGACAGTTGAACAATGCACGCAAACTGTTCGACGAAATTCCTCAATCGAACGTCCGCAGGTGGATA GTCATCGTGGGTGCCTATTCTCGGTGTGGATTTTACCGGGAAGCTTTGAATGTCTTCTTCGAAATGCAAAAACAAGGACCCTTGCGGCCATGTGTTTGA
AA sequence Show only first row Show all	>Lus10040778 pacid=23157577 polypeptide=Lus10040778 locus=Lus10040778.g ID=Lus10040778.BGIv1.0 annot-version=v1.0 MLALIRPRVFRDERKLSFYTGGHSRFHSSPEAYGEIIRTYSRRRSLRKGKALHAHLIVNGSARLTYLAEKLLSFYTECRQLNNARKLFDEIPQSNVRRWI VIVGAYSRCGFYREALNVFFEMQKQGPLRPCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040778 [exp]	0	1
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10005643 [exp]	2.8	0.7885
AT1G77010			Pentatricopeptide repeat (PPR)...		Lus10010146 [exp]	3.9	0.7297
AT2G03880		REME1	required for efficiency of mit...		Lus10005642 [exp]	6.6	0.7446
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	118.5	0.6763
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	177.0	0.6390
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10000029 [exp]	197.9	0.6247
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	260.0	0.6257

Compare expression of checked genes

Lus10040778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.