Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59600 182 / 5e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 137 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 133 / 6e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G36730 129 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19191 130 / 5e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G50990 129 / 7e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 126 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 126 / 1e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 125 / 3e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 124 / 6e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016511 [exp] 253 / 4e-83 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 134 / 3e-37 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 133 / 5e-37 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030225 [exp] 129 / 9e-37 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 131 / 2e-36 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 130 / 3e-36 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010385 [exp] 130 / 3e-36 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 130 / 7e-36 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 129 / 1e-35 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243800 [exp] 206 / 7e-65 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 132 / 4e-37 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G085500 [exp] 131 / 2e-36 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G175900 [exp] 128 / 9e-36 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 129 / 2e-35 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 129 / 2e-35 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 127 / 7e-35 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 125 / 2e-34 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.012G109300 [exp] 124 / 4e-34 AT5G50990 616 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G072500 [exp] 124 / 5e-34 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040779 pacid=23157686 polypeptide=Lus10040779 locus=Lus10040779.g ID=Lus10040779.BGIv1.0 annot-version=v1.0 ATGTACGCGAAATCTGGGTTTCTTCCAGAAGCGAGATCTATTTTCCACAGGACAGCAGAGAAGAACGCTGCTACATGGAATTCGATGATATTCGGGAATG CAAACAACGGATGCTTGGACGAAGCAATCAGACTGTTTACTCAGATGGAAAATACGGAGGGCGATAGACTCGACCACTTGACTTTCACGGCGGTGTTTAC TGCTTGTAGTCATGCAGGAATGATCGAGCTCGGACAAAGTCTGTTCGTTATGATGCAACAGAAGTACAAAATTGCTCCGAGATTGGAGCATTACACGTGC ATGGTGGATCTTCTTGGCAATGCCGGGAAACTTACAGAGGCGTACGACCTGATCAAGACAATTCCTATGGAGCCGGACCTTTTTGCGTGGGGGGGCACTG TTAGGGGCGTGTAG
AA sequence Show only first row Show all	>Lus10040779 pacid=23157686 polypeptide=Lus10040779 locus=Lus10040779.g ID=Lus10040779.BGIv1.0 annot-version=v1.0 MYAKSGFLPEARSIFHRTAEKNAATWNSMIFGNANNGCLDEAIRLFTQMENTEGDRLDHLTFTAVFTACSHAGMIELGQSLFVMMQQKYKIAPRLEHYTC MVDLLGNAGKLTEAYDLIKTIPMEPDLFAWGGTVRGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	0	1
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	2.8	0.6621
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	3.6	0.7290
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	8.3	0.6792
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	16.8	0.6525
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	17.7	0.6821
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	23.2	0.5915
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10034583 [exp]	37.3	0.6608
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10016490 [exp]	39.1	0.6299
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	39.9	0.5873
					Lus10038177 [exp]	48.5	0.5823

Compare expression of checked genes

Lus10040779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.