Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29180 62 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016512 [exp] 119 / 1e-34 AT2G29180 82 / 4e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243500 [exp] 71 / 9e-16 AT2G29180 64 / 5e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040781 pacid=23157927 polypeptide=Lus10040781 locus=Lus10040781.g ID=Lus10040781.BGIv1.0 annot-version=v1.0 ATGGCTGCAACCACCACCATCATTTCCCCACTTCGGCCAGCCCCTTTCTCTTCCAAACCCAGACCACCATCCTCGCTTCTCTTCCTACCGCCATGTGTCA CCACCTCCTTATCCAGTACTCGTAACCTCAGATTCCCATCTCACCGCAAACCCTACACAACAAGAAATTCCACAATCCTCGCCGCCGCCGTAGAGGCAGC TCCGCCGGCCGACGTAGTCGCCCCACTCGAAGAGATAGTCGTCCCCGACGATGGTGTTGGGACCGTCATCTCCACCCTTCTCTTCATCGCTTTCGTCATC CTCTCTGTCCTCACTATCGGAGTGATATACATTGCGGTTACAGATTTCCTGCAGAAGAGGGAAGGAGACAAGTTCAAGAAGGAAGAAGAAGAGAAGCAGA AGAAGAAAGGCGGCAAAGAGAGGAAGCTTAGGGCTAGGTCTAGAGCTGGCCCAAGAGGATTCGGCCAGAAGGTTGCCGTCGACGAAGAGGATGAACTCGA CGACTGA
AA sequence Show only first row Show all	>Lus10040781 pacid=23157927 polypeptide=Lus10040781 locus=Lus10040781.g ID=Lus10040781.BGIv1.0 annot-version=v1.0 MAATTTIISPLRPAPFSSKPRPPSSLLFLPPCVTTSLSSTRNLRFPSHRKPYTTRNSTILAAAVEAAPPADVVAPLEEIVVPDDGVGTVISTLLFIAFVI LSVLTIGVIYIAVTDFLQKREGDKFKKEEEEKQKKKGGKERKLRARSRAGPRGFGQKVAVDEEDELDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29180			unknown protein		Lus10040781 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	1.4	0.9306
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	8.6	0.9090
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	15.0	0.8811
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	15.2	0.9021
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	15.7	0.8931
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	15.9	0.8928
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	16.2	0.9024
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Lus10041397 [exp]	18.0	0.8647
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10022453 [exp]	21.2	0.9013
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	21.8	0.8949

Compare expression of checked genes

Lus10040781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.