Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29190 980 / 0 APUM2 pumilio 2 (.1.2) AT2G29200 960 / 0 APUM1 pumilio 1 (.1) AT2G29140 951 / 0 APUM3 pumilio 3 (.1) AT3G10360 608 / 0 APUM4 pumilio 4 (.1) AT3G20250 481 / 1e-153 APUM5 pumilio 5 (.1) AT4G25880 409 / 1e-127 APUM6 pumilio 6 (.1.2.3) AT1G22240 171 / 5e-45 APUM8 pumilio 8 (.1) AT1G78160 168 / 3e-43 APUM7 pumilio 7 (.1) AT5G56510 165 / 2e-42 APUM12 pumilio 12 (.1) AT4G08840 160 / 3e-41 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016513 [exp] 1763 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 1092 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 1059 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 937 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 666 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 663 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 623 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 493 / 7e-159 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 490 / 2e-156 AT3G20250 880 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034900 [exp] 1294 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 1225 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.010G201100 [exp] 951 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 915 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 661 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 654 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 492 / 2e-157 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 486 / 3e-155 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 472 / 8e-150 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 189 / 7e-50 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10040782 pacid=23157855 polypeptide=Lus10040782 locus=Lus10040782.g ID=Lus10040782.BGIv1.0 annot-version=v1.0 ATGTTGTCTGAATTGGGAAGGAGGCCGATGATGGGAGGAACTGGTGATGGATCCTACGGCGATGACTTGGAGAAGGAAATAGGGTTGCTACTGCGCACTA GGCAAGAAGCCGATGATGATCTTGAGAGGGAGCTCAATATGTACAGAAGCGGCTCTGCTCCTCCTACCGTGGAGGGCTCTCTCAACGCCGTCGGCGGCTT GTTCGCCGGTGGTGGTCTGGCTGGAGGTGGCGGTGCTAGCTTCTCTGACTTTGTTAGTGGTAAAAACGGTGGATTTCTGAATGAAGAGGAGCTTAGGTCT GATCCAGCTTATTCAGCTTACTATTACTCTAATGCGAATTTGAATCCTAGGCTGCCGCCTCCTTTGATGTCAAAGGAGGATTGGAGGTTTTCTCAGAGAA TGAAGGGAGGAGGTGGAAGTTCAGCAGTTGTAGGTGGGATTGGGGATAGGAGGAGTATCAGTAGGGGGGCTGATAATGGGAGTGGAAGGTCGATGTTCGC GATGCCTCCCGGTTTCAATTCGAGGAAGCTCGAGAATGGTAGCGAGCCGGAGAATGTTCGCAACTCCAGTGAATGGGGTGGTGATGGCCTGATAGGTTTG CCAGGGTTGGGACTTGGGGCTAAGCAAAAGAGTCTTGCTGATATCTTTCAGGATGACATGGCTCGTGCGCCTGCTGCTGTGGGCCACCCTTCCCGGCCAT GTAGTCGAAATGCGTTCAGCGAAAATGTCGATAATTTAGGTGCAGCCGAAGCTGAGTTAGCTCACTTGCGCCGTGAATTGTCCTCCGCAGATCCTGTACG GTCTGTATCCAATGGACAAGGATCTTCTTCTGTGCAAAGTGTCGGCCAACCTTCATCCTATTCCTATGCTGCTGTTCTTGGTGCATCTTTATCCAGGAGC AATACTCCTGATGCTCAAAAAGTTGTTGCTAGGGCTCCTAGTCCTTGTCCTACACCCATTGGTCAGGGTAGAAATTCCGCATCCGAAAAGAGAGCTGGTG GTGGCACGGGTTCCAACTCATTTAATGGTGCCCCGAGTGAATCTGAACAGCTTGTGAATGCTTTAAATGGTATGACCTTGTCAGCGAATAACGGTGTAGT CGAAGAAAACCAGTTGCGATCTCAGGTCGAGCACGATGATCGCCAGAATTATTTGTTCGGTATCCAAGGTGGTGGTCAGAATCACTTGAAGCAGAATGCT TACTATAAGAATTCCGACTCTGGAAAGATGTCGTATGCTGATTATGGCAAGAGCAATGGCGGTAGCCCGGACCTGATGGGCTCTTCTTCCTACGGGGAAA GGCAAAAGCCAGATGTTCATGGTAATTCGTATTTGAATGGATCTCCTCCGTTTAATCTCAACAGCAGAAGTAGCTTACCGGCTTACCAGCATCTAGATAG CATGAATTCATCACTTCTGAACTATGGAGTGGGTGGATATTCCGCCAACCCGGGATTAAACTCTATGATTGCTGGCCAAATTGGCACTGGAAATCTTCCT CCTTTATTCGAGAATGTTGCTGCAGCATCAGCCATGGGTGGTGTCCATGGATTGGAGTCTAGAGTTCTCGGAGGAGCTGCTAATTCCGAGTCGCACAATT TTCGAAGACTGGGGAGTCCTATTGCTGGGAGTGCCTCACAAGCACCATATGTCGATCCATTGTATCTTCATCAGTATATTAGAACTCCTGAATATGCTGC AGCTCAGCTTGCAGCACTTAATGATCCCACCGGTGAAGGGAGCTATCTGGGAAACTCGTACATGAACTTGCTCGAACTGCAAAAAGCCTATGCTGGAGCT ATGCTGTCTCCACACAACAAATTGCAGTATGGAGTTCCCGGTGGTGGGAAATCCGGCAATTCGAACCTCCATAACTACTATGGGAATCCTGGTTATGGTG TTGGAATGTCATATCCCGGGAGTCCCCTGGCAAGCCCCATCATGGGTCCGAACTCTCCTGGTAGTCCGATGCGATCTCACAACGATCTGAATATGAGATT TGGTTCCGGTATGAGGAACATGGGCGGTGGCGGTATCATGGGTCCTTGGCACTTGGATGGAGGAATGGATGATAGTTTTGCATCTTCACTGCTGGAAGAG TTCAAGAGCAACAAAACAAAGTGTTTGGAACTTTCAGAAATCGCAGGTCATGTTGTGGAGTTCAGTGCTGATCAATATGGGAGCCGGTTCATCCAACAGA AGCTAGAGACAGCCACGGCAGATGAGAAGAACATGCTGTATAAGGAAATCATGCCACAAGCTCTTGCTCTGATGACCGATGTGTTTGGTAATTATGTGAT CCAGAAGTTTTTCGAGCATGGACTGCCATCTCAGAGGAGAGAACTAGCTGCCAAGCTACCGGGACACGTCCTGACGCTTAGTCTTCAAATGTATGGCTGT CGAGTGATTCAAAAGGCTATCGAAGTGGTTGACCTTGACCAGAAGATTCAAATGGTTGAAGAGCTTGACGGTCATGTCATGCGTTGTGTTCGTTGTGTTC GTGATCAGAATGGCAACCATGCCATCCAAAAGCGCATCGAGTATATCCCCGAGGAAAATATCCAGTTCATTGTCTCGACTTTCTTCGATCAAGTAGTGAC CCTCTCTACCCATCCATATGGCTGCCGTGTGATACAGAGGGTCCTGGAACACTGTCTGGACCCAGAAACACAGAGCAAAGTCATGGATGAGATTCTGGGA GCTGTCAGCATGTTAGCTCAAGATCAATATGGCAATTATGTTGTTCAGCATGTACTGGAGCACGGGAAGCCCCATGAGCGATCCACAATCATTAAGGAGT TAGCCGGGAAGATCGTCCAGATGAGTCAGCAGAAGTTTGCTTCCAATGTTGTAGAGAAGTGTCTAACATTTGGTGGCAAGGAGGAACGCCAGCTACTGGT GAACGAGATGCTCGGCACTACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCGAACTATGTGGTACAGAAGGTGCTGGAGACCTGC GAGGATCAGCAGCGAGAGCTGATAATGACGCGAATCAAAGTCCATCTCAACGCGCTGAAGAAGTACACATACGGGAAGCATATCGTAGCCCGCGTAGAGA AACTCGTAGCTGCTGGAGAGAGGAGAATGGCTGCACAGTCTCTGCATCCTAGTGCATAG
AA sequence Show only first row Show all	>Lus10040782 pacid=23157855 polypeptide=Lus10040782 locus=Lus10040782.g ID=Lus10040782.BGIv1.0 annot-version=v1.0 MLSELGRRPMMGGTGDGSYGDDLEKEIGLLLRTRQEADDDLERELNMYRSGSAPPTVEGSLNAVGGLFAGGGLAGGGGASFSDFVSGKNGGFLNEEELRS DPAYSAYYYSNANLNPRLPPPLMSKEDWRFSQRMKGGGGSSAVVGGIGDRRSISRGADNGSGRSMFAMPPGFNSRKLENGSEPENVRNSSEWGGDGLIGL PGLGLGAKQKSLADIFQDDMARAPAAVGHPSRPCSRNAFSENVDNLGAAEAELAHLRRELSSADPVRSVSNGQGSSSVQSVGQPSSYSYAAVLGASLSRS NTPDAQKVVARAPSPCPTPIGQGRNSASEKRAGGGTGSNSFNGAPSESEQLVNALNGMTLSANNGVVEENQLRSQVEHDDRQNYLFGIQGGGQNHLKQNA YYKNSDSGKMSYADYGKSNGGSPDLMGSSSYGERQKPDVHGNSYLNGSPPFNLNSRSSLPAYQHLDSMNSSLLNYGVGGYSANPGLNSMIAGQIGTGNLP PLFENVAAASAMGGVHGLESRVLGGAANSESHNFRRLGSPIAGSASQAPYVDPLYLHQYIRTPEYAAAQLAALNDPTGEGSYLGNSYMNLLELQKAYAGA MLSPHNKLQYGVPGGGKSGNSNLHNYYGNPGYGVGMSYPGSPLASPIMGPNSPGSPMRSHNDLNMRFGSGMRNMGGGGIMGPWHLDGGMDDSFASSLLEE FKSNKTKCLELSEIAGHVVEFSADQYGSRFIQQKLETATADEKNMLYKEIMPQALALMTDVFGNYVIQKFFEHGLPSQRRELAAKLPGHVLTLSLQMYGC RVIQKAIEVVDLDQKIQMVEELDGHVMRCVRCVRDQNGNHAIQKRIEYIPEENIQFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCLDPETQSKVMDEILG AVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFGGKEERQLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETC EDQQRELIMTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMAAQSLHPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10040782 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	2.8	0.8374
AT1G36990			unknown protein		Lus10003744 [exp]	6.3	0.7785
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	6.6	0.8050
AT5G24260			prolyl oligopeptidase family p...		Lus10018107 [exp]	14.8	0.7026
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	27.3	0.7444
AT4G01290			unknown protein		Lus10036389 [exp]	32.9	0.7341
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	59.1	0.7299
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	60.7	0.7553
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	68.8	0.7351
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	73.7	0.7282

Compare expression of checked genes

Lus10040782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.