Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46620 155 / 9e-45 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G59550 150 / 1e-42 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G39720 147 / 8e-42 RHC2A RING-H2 finger C2A (.1) AT2G40830 116 / 2e-30 RHC1A RING-H2 finger C1A (.1.2.3) AT3G13430 112 / 5e-29 RING/U-box superfamily protein (.1.2.3) AT3G19950 112 / 5e-29 RING/U-box superfamily protein (.1) AT3G56580 110 / 2e-28 RING/U-box superfamily protein (.1.2.3) AT3G10815 102 / 1e-26 RING/U-box superfamily protein (.1) AT1G60360 103 / 9e-26 RING/U-box superfamily protein (.1) AT1G55530 102 / 6e-25 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004712 [exp] 169 / 3e-50 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 161 / 2e-48 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10024372 [exp] 130 / 1e-35 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10010179 [exp] 116 / 5e-31 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030755 [exp] 114 / 9e-30 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 113 / 2e-29 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10000023 [exp] 107 / 3e-28 AT5G59550 159 / 5e-47 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 105 / 1e-27 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10002637 [exp] 105 / 5e-26 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243300 [exp] 173 / 5e-52 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 172 / 5e-52 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 164 / 5e-49 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G058100 [exp] 164 / 4e-48 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G201300 [exp] 163 / 1e-47 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.012G036700 [exp] 121 / 2e-32 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 119 / 2e-31 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 116 / 9e-31 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.005G090500 [exp] 115 / 1e-30 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 115 / 2e-30 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06547 [flax] [poplar] DUF1117 Protein of unknown function (DUF1117) CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10040783 pacid=23157569 polypeptide=Lus10040783 locus=Lus10040783.g ID=Lus10040783.BGIv1.0 annot-version=v1.0 ATGTCCGAGTTCTTGATGGGATCTGGATTCGAGCGTCTCCTGGACCAGTTGACCCAGATCGAGATAAACGGGATCGGGCGACCCGGGAACCCGCCCGCTT CAAAAGCGGTGGCAGAATCGCTCCCGATCTTGGAAGTCGACCAGAGCGTGGTCCTCGCTGAATCTCACTGCGCGGTCTGTAAAGAAGCGTTCGAGCTGGG ATCGGAGGCCAGAGAAATGCCCTGCAAGCACATATACCATTCCGATTGTATCCTCCCTTGGCTCGCGATACGGAATTCCTGCCCGGTCTGTCGGCACGAG CTCCCGTCGGCGACGACGGCTGATCCGCAAGAAGGCGGCGGCGGCAGCGAGAATCCCAACGAGGAGGAGGAAGTCGTCGGGCTGACGATATGGAGGCTCC CTGGAGGAGGATTCGCGGTGGGGAGATTTGGCGGCGGAAGGAGAGGAGGAGAAAGGGAGTTCCCCGGTGTGTTCACCGAGATGGACGGAGGATTTAACGG CGGAGGTAATGGTGGTAACGGAGGTGGGGTTCCGAGGAGGGTTTCGTGGGTGAGCAGAAGTAGCCGTGGCAGGGGAAAAAGTAGCCGTGGCAGAGGAAAC GGCGGCGGATTGAGAAGGATTGTCCGTGGGTTTCTTTCCCTGTTACGATTTCGGTCAAATTCTGCTTCTTCATCTCATCCTACCGGATCTTTTAACAGAA GCTCGTCGTCATCAACTCGTTCTTCTGGGTTTGGGGGATTGGTGAGGAGGAGAAGTAGTAGAGGTGTTGAATTTGAAGTTGAGAGTGGGACAGATAGATG GTGA
AA sequence Show only first row Show all	>Lus10040783 pacid=23157569 polypeptide=Lus10040783 locus=Lus10040783.g ID=Lus10040783.BGIv1.0 annot-version=v1.0 MSEFLMGSGFERLLDQLTQIEINGIGRPGNPPASKAVAESLPILEVDQSVVLAESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLAIRNSCPVCRHE LPSATTADPQEGGGGSENPNEEEEVVGLTIWRLPGGGFAVGRFGGGRRGGEREFPGVFTEMDGGFNGGGNGGNGGGVPRRVSWVSRSSRGRGKSSRGRGN GGGLRRIVRGFLSLLRFRSNSASSSHPTGSFNRSSSSSTRSSGFGGLVRRRSSRGVEFEVESGTDRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	0	1
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	1.4	0.9001
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	2.4	0.8866
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029541 [exp]	3.0	0.8449
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10024108 [exp]	4.9	0.8570
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	4.9	0.8852
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	5.5	0.8606
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	6.0	0.8377
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	6.2	0.8365
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	6.3	0.8438
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	6.3	0.8639

Compare expression of checked genes

Lus10040783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.