Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 457 / 6e-162 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G22810 417 / 2e-146 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G53100 414 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 379 / 2e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 263 / 2e-85 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 251 / 4e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 250 / 1e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 248 / 1e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 239 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008639 [exp] 603 / 0 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 541 / 0 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008635 [exp] 481 / 2e-171 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 460 / 2e-163 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 383 / 1e-132 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 382 / 3e-132 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 351 / 3e-120 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 276 / 1e-90 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 271 / 6e-89 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118300 [exp] 475 / 2e-169 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 434 / 5e-153 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 367 / 9e-127 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 321 / 7e-108 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 295 / 9e-99 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 260 / 5e-84 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 256 / 7e-83 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 252 / 2e-81 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G219700 [exp] 251 / 4e-81 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 248 / 8e-80 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10040791 pacid=23157932 polypeptide=Lus10040791 locus=Lus10040791.g ID=Lus10040791.BGIv1.0 annot-version=v1.0 ATGGGTGTTGTCTGGGGTGCTTCACTTGTACTTCTTCTTGCTTCAGTCTCTTCACTAATGGTGTCTGCTGATCCTCTCGTACCGTCACTCACCATCTTCG GCGACTCAGTCTCCGATGTTGGGAACAACAACAACCTCATCACTCTCATAAGGGCGAACTTCCCCCCTTATGGAAGGGATTTCGCCGATCATAGACCCAC CGGAAGGTTCAGCAATGGGAAGCTAGCTATCGACATCACCGCTGACTATCTCGGTTTCACCTCATACCCACCTCCATACCTAAGCCTAGAAGCTGAACAC ATGGGAAGTGTTCTGACCGGACTCAATTTCGCTTCCGGTGCTTCCGGTCTCCTCGATGAAACTGCTCACCTATATGGAGCTGTTTCGTTGTCACGACAGC TGAAGAACTACAAAGAATACAGGTCAGGAGTTGAGAGCAAAGTAGGAACACAAAACTCCAGCGACATATTCTCAAAGGGGATTCATTTGCTCAGCGCTGG AACCAGTGATTTCATCCAGAACTACTACATCAACCCTGTCTTAAGAGCGCTCCATACTCCCGATCAGTTCTCTGATAAGCTCATGGATTCTTATACTACC TTCATTCAGAACATGTACGGACTCGGAGCAAGGAGGATCGGAGTGACGACACTGCCTCCGATTGGATGCTTGCCAGCAGCAATCACCCTCTTCGGCCACC TAGGGAGCAACGAATGCGTCGAGAAGCTGAACTGGGACGCAACTTCTTTCAACCAGAAGCTAAACACGACTTCTCAGAGCCTTGTGGAAGGACTTCCTGG CCTTAAGATTGTTGTCTTTGATGTCTACAACCCGCTCCTGAACCTGGTCAAAAAGCCAAGTGACAGCGGGTTCACTGAGGCGAGAAAGGCGTGTTGCGGG ACTGGCATCCTGGAGACTGCGTTTATGTGTAATGCGATGTCGCCTGGGACGTGTTCGAATGCTACGGAGTATGTGTTCTGGGATGGATTCCACCCTTCTG AAGCTGCTAACAATGTCCTAGCTCAAGCTGTACTTTCTCAGGGATTTGCGCTCATATCTTAA
AA sequence Show only first row Show all	>Lus10040791 pacid=23157932 polypeptide=Lus10040791 locus=Lus10040791.g ID=Lus10040791.BGIv1.0 annot-version=v1.0 MGVVWGASLVLLLASVSSLMVSADPLVPSLTIFGDSVSDVGNNNNLITLIRANFPPYGRDFADHRPTGRFSNGKLAIDITADYLGFTSYPPPYLSLEAEH MGSVLTGLNFASGASGLLDETAHLYGAVSLSRQLKNYKEYRSGVESKVGTQNSSDIFSKGIHLLSAGTSDFIQNYYINPVLRALHTPDQFSDKLMDSYTT FIQNMYGLGARRIGVTTLPPIGCLPAAITLFGHLGSNECVEKLNWDATSFNQKLNTTSQSLVEGLPGLKIVVFDVYNPLLNLVKKPSDSGFTEARKACCG TGILETAFMCNAMSPGTCSNATEYVFWDGFHPSEAANNVLAQAVLSQGFALIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	1.4	0.9481
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	2.0	0.9381
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	3.0	0.9409
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	3.5	0.9475
					Lus10003411 [exp]	4.2	0.9109
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10021448 [exp]	7.8	0.8032
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	8.9	0.9245
AT3G21690			MATE efflux family protein (.1...		Lus10020049 [exp]	9.3	0.8493
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	10.6	0.9107
					Lus10016958 [exp]	11.2	0.8987

Compare expression of checked genes

Lus10040791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.