Plant FIBer expression Database

Lus10040792 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60340 195 / 3e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016525
[exp]
281 / 3e-98 AT5G60340 261 / 4e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G109400
[exp]
231 / 3e-78 AT5G60340 231 / 4e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.006G228500
[exp]
230 / 6e-78 AT5G60340 228 / 5e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10040792 pacid=23157648 polypeptide=Lus10040792 locus=Lus10040792.g ID=Lus10040792.BGIv1.0 annot-version=v1.0
ATGGCGGTAGAAGCAAAGAGGACGAAACCAAACATACTGATAACGGGAACACCAGGGACCGGAAAAACGACGACGTCTTCAGCTTTGGCGGAGGCGTTGC
TGCTCCGCCACATCAACATCGGAGATTTGGTAAAGGAGAAGAAGTTGCACGACGGCTGGGACGATCAATTCGAATGCCACGTCATCAACGAGGATCTGGT
GTGCGATGAAATAGAGGACGCTATGGAAGAAGGAGGGAACATAGTGGACTACCACGGCTGCGATTTCTTCCCGGAGCGGTGGTTCGACCGGGTGGTGGTT
CTCCAAACCGAAAACTCCGTTTTGTTTGACCGCTTGACCAAGAGGGGATACTCGGAGACCAAGGTTAAGAACAACATAGAGTGCGAGATCTTCCAAGTAC
TGCTGGAGGAGGCTAAAGATGGCTACCCTGAACACATTGTTGTGGCTCTGCGTAGTGATTCCGTTGAAGATGTTTCGAGTAACGTCGAGTCTCTTTCGGA
ATGGTTCAGGAACTGGCAACCTGCTGCTTCTTCCTCCTGA
AA sequence
>Lus10040792 pacid=23157648 polypeptide=Lus10040792 locus=Lus10040792.g ID=Lus10040792.BGIv1.0 annot-version=v1.0
MAVEAKRTKPNILITGTPGTGKTTTSSALAEALLLRHINIGDLVKEKKLHDGWDDQFECHVINEDLVCDEIEDAMEEGGNIVDYHGCDFFPERWFDRVVV
LQTENSVLFDRLTKRGYSETKVKNNIECEIFQVLLEEAKDGYPEHIVVALRSDSVEDVSSNVESLSEWFRNWQPAASSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G60340 P-loop containing nucleoside t... Lus10040792
[exp]
0 1
AT5G65860 ankyrin repeat family protein ... Lus10032850
[exp]
3.7 0.8398
AT2G18196 Heavy metal transport/detoxifi... Lus10010147
[exp]
5.3 0.8380
AT3G47120 C3HZnF RNA recognition motif (RRM)-co... Lus10018227
[exp]
8.2 0.8186
AT5G64816 unknown protein Lus10009081
[exp]
14.2 0.8309
AT5G60340 P-loop containing nucleoside t... Lus10016525
[exp]
16.2 0.7737
AT5G52840 NADH-ubiquinone oxidoreductase... Lus10014951
[exp]
20.9 0.7736
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Lus10019638
[exp]
24.9 0.7748
AT3G22430 unknown protein Lus10041203
[exp]
25.8 0.8183
AT4G08460 Protein of unknown function (D... Lus10009772
[exp]
26.4 0.7852
AT5G06240 EMB2735 embryo defective 2735 (.1) Lus10021327
[exp]
28.0 0.7718

Lus10040792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.