Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24330 221 / 5e-73 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 199 / 2e-64 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT4G30860 40 / 0.0001 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016526 [exp] 269 / 1e-92 AT5G24330 388 / 4e-136 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10007782 [exp] 241 / 1e-81 AT5G24330 386 / 1e-135 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10038740 [exp] 45 / 3e-06 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10010121 [exp] 40 / 0.0002 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10012626 [exp] 40 / 0.0002 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10030262 [exp] 39 / 0.0005 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018300 [exp] 230 / 1e-76 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 229 / 3e-76 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G058000 [exp] 207 / 5e-67 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G109900 [exp] 205 / 2e-66 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G147200 [exp] 39 / 0.0005 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G182100 [exp] 38 / 0.0008 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10040794 pacid=23157903 polypeptide=Lus10040794 locus=Lus10040794.g ID=Lus10040794.BGIv1.0 annot-version=v1.0 ATGGTCGTGTTTGATCCACTAGAAGGGTTCACAGTAGAGGCAGACAGATCGATCAAGGACTGGACAATCATCACCGAGTATGTCGGAGACGTAGATTACT TGAGGAACAGGGAAAACGACAATGGAGATAGCACAATGACGCTGCTTTCGGCTTCCGATCCTGGCAAGAGCCTGGTGGTGTGTCCTTATAGGAATGGGAA TATAGCAAGATTCATCAACGGCATCAACAACCATACGCAGGAAGGTAGGAGGAAGCAGAACCTGAAATGTGTGAGGTTTGCTGTTGATGATGAGTGCCGG GTGTTGCTGATTGCTAATAGGGATATAGCTAATGGGGAGAGGTTGTATTATGATTATAACGGTGATGAGCATGAGTACCCTACTGAGCATTTTGTTTGA
AA sequence Show only first row Show all	>Lus10040794 pacid=23157903 polypeptide=Lus10040794 locus=Lus10040794.g ID=Lus10040794.BGIv1.0 annot-version=v1.0 MVVFDPLEGFTVEADRSIKDWTIITEYVGDVDYLRNRENDNGDSTMTLLSASDPGKSLVVCPYRNGNIARFINGINNHTQEGRRKQNLKCVRFAVDDECR VLLIANRDIANGERLYYDYNGDEHEYPTEHFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10040794 [exp]	0	1
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	8.1	0.8991
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	8.8	0.8979
AT3G60660			unknown protein		Lus10010359 [exp]	9.8	0.8853
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	13.5	0.8898
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	15.7	0.8841
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	16.4	0.8850
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	23.6	0.8781
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	25.7	0.8708
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	26.7	0.8822
AT3G13000			Protein of unknown function, D...		Lus10027653 [exp]	32.3	0.8561

Compare expression of checked genes

Lus10040794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.