Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46590 354 / 8e-115 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT1G07540 313 / 7e-98 MYB TRFL2 TRF-like 2 (.1) AT5G13820 295 / 4e-91 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT5G59430 291 / 4e-90 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G12560 285 / 1e-87 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT3G53790 177 / 8e-50 MYB TRFL4 TRF-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016527 [exp] 1119 / 0 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040285 [exp] 312 / 4e-97 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 303 / 2e-93 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10002704 [exp] 300 / 2e-92 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 275 / 2e-83 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 266 / 6e-80 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 259 / 2e-77 AT1G07540 308 / 7e-97 TRF-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032000 [exp] 584 / 0 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.001G241600 [exp] 577 / 0 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.010G202400 [exp] 358 / 3e-114 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.006G086500 [exp] 291 / 3e-89 AT1G07540 370 / 2e-119 TRF-like 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040795 pacid=23157631 polypeptide=Lus10040795 locus=Lus10040795.g ID=Lus10040795.BGIv1.0 annot-version=v1.0 ATGGTGTTGAAAAGGAGACTAGATTATGGACTCAATGGCTATGAATTCCCTTCTATACCCAGAGCAGCCAGATCAGTCAGGAGGAGGGTTCCCTTCAAGA AGCGGTTTCAAGAGAATCAAATGTCTGCATTTGACTTGCTGGCTGATGTAGCTGGAAAGTTATTGCTTGAGAATGATACTTCTACCCCTTCTGGCAATGT CGTGCCTAAAGATGAAACCTTTGAAGCAAAAGCTTGCGATCGAGCAAGTCCAGATAGAAGTCACTGTCATAAAGGATCTTTGTATAGCGATAGTGGTGTT TTTTTAGGATTAGCTTCTGCAGCAACAAATTCTGGTTTCAAGGAGAATGGTGATAAGTTGGTGAATGGAGAAGTTACTGATGAAATAGGGATCACTTCTA CCAAGGTGAGCGACACTGAACATAGCATAAAAGACGAGCCTTGTAAGCCAGAGAAGGAGGTGGCGAACGACATTGGTGCTGGTATGTTTACTTCAGAAGT TCCTTTGGTTTCTGATGATAAAAAACGTCACAAATTGAACAGTATAGACAGCACATTGTTGTGTGCACAGCACATTCCTCATTGTTCTTATCCTGCAAAT GAGGATAATAATGTAAATATAGTTAGTAGAGATGATGACGAAAACTCTTCTGGGTGTACTCACCCTATCACAAAAAGATTCTTAAGGCCAACTCCGCGTA TCGGAGACCGAAGAATCAGGAAAATTATGGCTTCCAGATGCTGGAAGGTTGCGTCAAGACGGAAAGATACAACCTTTTCTAACCGACGGGACGTGAAGCC CTTTTATCAGAATGGTAAGAACTACCACAGATTTGACAGATCTGAAGGGCTATATCCAATAAAAAAGAGGAGACGTTTCGGTTATAGCTCGCTATCAAAT TATGGAGGCGTAATTGATAGCGAGTTTGCTTCTGAGTTTCCTCACAACGGCTACAATGCAGATGCTTCTGGTGCCATGAAACGGAAGTCATACCAACCTA GGGATCGTCATGTAAAGCTGAGGATAAAGTCATTTAAGGTGCCGGAACTTTTCGTTGAGATTTCAGAGAGTGCCACCGTTGGTTCATTGAAGAGGACCGT CGTGGATGCTCTCAGAGCATTTCTTGGAGGCGGCGTGCGTGTTGATGTTCATCTTCAGGGGAGGAAGGTTAGGGATGACCATCAGACATTATCGCAGACT GGAATTTCTCACAGTAATCATTTGGATGCTTTGGGGTTCAGCCTGAAGCCAAACTCCTCGCCGGATACTGGTTCTGTTTGCTCTGTAGAATTTCCTTCTA CTTCTTCCTGTCCGAAACCTCAGCCACTTAGCAGTTATCCACGAACTCCGATTGTGGTACATCAGAGCACCCATGCTGCTTCTCCTGAGCCTCGCACAGT AAATCTGCGGAATTTGATTGAGAGTGACCATGACTCAGCCCCCTCCCCTATAGACACAAGTGATTCGAAACCACCATTGGCTGTACCACCATCAATGGAC ATGGATGCATTAGCGATGGTTCCAGCCAACCGGAAATCCAAGCGTGCTGTGATGGCTCAGCGCCGAATTCGTCGACCTTTCTCTGTTGCTGAAGTGGAAG CGTTGGTTCAAGCAGTTGAAGAACTGGGTACTGGAAGATGGCGGGATGTCAAGCTCAGAGCTTTCGATCATGCAAAGCATCGAACTTATGTCGATTTGAA GGCAAGTTTACACTCGCAATCTCAATTTGATAAGTGGAAAACACTGGTGCACACAGCAAGAATATCCCCACAACAAAGGAGGGGAGAGCCAGTACCACAG GAGCTGCTGGATAGGGTTCTAAATGCTCATGCTTATTGGTCCCACCAGCTAGCCTTTCAACTTTCAGAGCCTTCTACAACTCCTCTGAAAGCTCTTCCTG TGGAAAGTGGGCTATAA
AA sequence Show only first row Show all	>Lus10040795 pacid=23157631 polypeptide=Lus10040795 locus=Lus10040795.g ID=Lus10040795.BGIv1.0 annot-version=v1.0 MVLKRRLDYGLNGYEFPSIPRAARSVRRRVPFKKRFQENQMSAFDLLADVAGKLLLENDTSTPSGNVVPKDETFEAKACDRASPDRSHCHKGSLYSDSGV FLGLASAATNSGFKENGDKLVNGEVTDEIGITSTKVSDTEHSIKDEPCKPEKEVANDIGAGMFTSEVPLVSDDKKRHKLNSIDSTLLCAQHIPHCSYPAN EDNNVNIVSRDDDENSSGCTHPITKRFLRPTPRIGDRRIRKIMASRCWKVASRRKDTTFSNRRDVKPFYQNGKNYHRFDRSEGLYPIKKRRRFGYSSLSN YGGVIDSEFASEFPHNGYNADASGAMKRKSYQPRDRHVKLRIKSFKVPELFVEISESATVGSLKRTVVDALRAFLGGGVRVDVHLQGRKVRDDHQTLSQT GISHSNHLDALGFSLKPNSSPDTGSVCSVEFPSTSSCPKPQPLSSYPRTPIVVHQSTHAASPEPRTVNLRNLIESDHDSAPSPIDTSDSKPPLAVPPSMD MDALAMVPANRKSKRAVMAQRRIRRPFSVAEVEALVQAVEELGTGRWRDVKLRAFDHAKHRTYVDLKASLHSQSQFDKWKTLVHTARISPQQRRGEPVPQ ELLDRVLNAHAYWSHQLAFQLSEPSTTPLKALPVESGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	0	1
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10022711 [exp]	1.0	0.8646
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	2.0	0.8329
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	7.2	0.8002
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	8.3	0.7873
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	9.0	0.8503
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	11.0	0.7790
					Lus10004148 [exp]	15.9	0.8243
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	18.4	0.7941
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	19.6	0.7857
AT5G38700			unknown protein		Lus10025041 [exp]	20.6	0.7564

Compare expression of checked genes

Lus10040795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.