Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26250 861 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G19440 629 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G26640 612 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT2G16280 610 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G04220 590 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G01120 580 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 578 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 560 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G25450 553 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT5G43760 543 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016528 [exp] 1087 / 0 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10009799 [exp] 905 / 0 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10042318 [exp] 620 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 620 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 601 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 599 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002533 [exp] 598 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10028105 [exp] 595 / 0 AT2G26250 607 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10012611 [exp] 594 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218000 [exp] 931 / 0 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.006G080400 [exp] 640 / 0 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.009G116700 [exp] 627 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 622 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 619 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 614 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 604 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 602 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G079500 [exp] 590 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 587 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10040796 pacid=23157836 polypeptide=Lus10040796 locus=Lus10040796.g ID=Lus10040796.BGIv1.0 annot-version=v1.0 ATGGGTAGTGAAGGAGATCTCCTTTCCACAGAGATTGTCAACCGTGGCATAGAATCGTCAGGCCCTAATGCTGGCTCCTTGACATTCTCTGTTAGGGTGA GGAGGAGGTTGCCCGACTTCCTCCAGTCGGTGAACCTCAAGTATGTGAAGTTGGGTTACCATTACCTAATCAATCATGCCATCTATTTGGCAACCATTCC TGTTCTGGTGCTTGTGTTCAGTGCTGAAGTAGGAACCCTCAACAGGGAAGATCTCTGGAAAAGGTTGTGGGAAGATGCTCGCTATGATCTTGCTACTGTC CTTGCTTTCTTTGGCGTCTTTGTCTTCACACTCTCTGTCTACTTTATGTCACGCCCCAGATCTATTTACCTCATTGATTTTGTCTGCTATAAGCCTCATG ACGATCTCAAGGTGAGCAAGAATGAGTTCATGGACTTGGCCCGCAGGACAGGCAAGTTCGATGAAGCAAGCCTTGAATTCCAGAGGAGAATTTTGTATTC CTCGGGAATCGGAGACGAGACTTACATTCCCAAAGCTGTGATGTCTCAGGAGAAGTGTTCAACAATGAAAGAGGGCCGGGCAGAAGCCTCGATGGTGATG TTTGGTGCTCTGGACGAGCTGTTTGAGAAAACTGGTATCCGCCCCAAGGATGTTGGTGTCCTGGTGGTAAACTGCAGCATCTTTAACCCAACCCCGTCCC TATCCGCCATGATTATCAATCACTACAAGATGAGAGGGAACATTTTGAGCTACAATCTGGGAGGAATGGGCTGCAGTGCTGGGATTATAGCCGTAGACCT GGCCAGGGACATGCTTCAAGCCAACCCAAATAACTATGCTGTTGTGGTTAGTACTGAGATGGTCGGCTACAACTGGTACTCCGGAAAGGACCGTTCCATG CTCATCCCTAACTGCTTCTTCAGAATGGGTTGCTCTGCGATTCTCATGTCAAACAGGAGGCGAGATTACACGCGTTCCAAGTATCGTCTCGAACACATAG TCCGAACCCACAAAGGTGCTGATGATCGCAGTTTCAGGTGTATTTACCAAGAAGAAGACGAGGAAAGGAACAAGGGACTAAAGGTGAGCAAGCACCTTGT GGAAATAGGAGGAGAAGCCTTGAAAGCCAACATCACAACTCTAGGTCCATTAGTGCTACCATTCTCAGAGCAAGTCCTCTTCTTTGCCACCCTCGTCAAA AGGCACCTCTTTGGAAAAACCCAGAGCAATAAACCCGGCACTGCAGCAGCAGCATCCTCAAAGCCTTATATTCCAAACTACAAGCTGGCATTCGAGCACT TCTGTGTTCACGCAGCGAGCAAGACCGTGCTGGACGAACTGCAGAGGAACCTCGAACTGAGCGACAAGAACGTCGAAGCGTCCAGAATGACTCTGCACAG GTTTGGCAACACTTCCAGCAGCAGCATATGGTACGAGCTGGCTTACTTGGAGGCAAAAGAGATGGTGAAGAGAGGGGACCGGGTTTGGCAGCTCTCGTTC GGTTCCGGGTTCAAGTGCAACAGCCTGGTGTGGAAGGCCACAAGACGCTCGAGGAAGCCTTCCACGGGGAACCCATGGCTGGATTGA
AA sequence Show only first row Show all	>Lus10040796 pacid=23157836 polypeptide=Lus10040796 locus=Lus10040796.g ID=Lus10040796.BGIv1.0 annot-version=v1.0 MGSEGDLLSTEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLVLVFSAEVGTLNREDLWKRLWEDARYDLATV LAFFGVFVFTLSVYFMSRPRSIYLIDFVCYKPHDDLKVSKNEFMDLARRTGKFDEASLEFQRRILYSSGIGDETYIPKAVMSQEKCSTMKEGRAEASMVM FGALDELFEKTGIRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIAVDLARDMLQANPNNYAVVVSTEMVGYNWYSGKDRSM LIPNCFFRMGCSAILMSNRRRDYTRSKYRLEHIVRTHKGADDRSFRCIYQEEDEERNKGLKVSKHLVEIGGEALKANITTLGPLVLPFSEQVLFFATLVK RHLFGKTQSNKPGTAAAASSKPYIPNYKLAFEHFCVHAASKTVLDELQRNLELSDKNVEASRMTLHRFGNTSSSSIWYELAYLEAKEMVKRGDRVWQLSF GSGFKCNSLVWKATRRSRKPSTGNPWLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	0	1
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	1.0	0.9765
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	3.2	0.9244
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	4.2	0.8837
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	4.5	0.9117
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	5.5	0.9033
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008897 [exp]	6.6	0.8821
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	7.7	0.8824
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	8.0	0.8310
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	8.9	0.8875
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	10.2	0.9119

Compare expression of checked genes

Lus10040796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.