Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21970 444 / 2e-154 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 133 / 5e-34 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 113 / 1e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G08940 110 / 9e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 108 / 8e-26 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 108 / 1e-25 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 100 / 6e-23 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 100 / 7e-23 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 100 / 1e-22 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G31290 98 / 3e-22 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016529 [exp] 692 / 0 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 145 / 2e-38 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 142 / 2e-37 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 116 / 1e-28 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10008711 [exp] 110 / 1e-26 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 108 / 7e-26 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 103 / 4e-24 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10003062 [exp] 102 / 1e-23 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10012374 [exp] 102 / 2e-23 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218100 [exp] 470 / 2e-164 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 136 / 3e-35 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 134 / 2e-34 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 120 / 4e-30 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 115 / 3e-28 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 114 / 9e-28 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 103 / 5e-24 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 101 / 3e-23 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 100 / 4e-23 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 95 / 3e-21 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10040797 pacid=23157729 polypeptide=Lus10040797 locus=Lus10040797.g ID=Lus10040797.BGIv1.0 annot-version=v1.0 ATGGCTACCCGGTTCTTGCGGAGTGTGAGTGAACTCCAAGTGTTTGTGTATATGCCTCAGAGAAATGGCGGCGGCCAACTTTGTCAGAGCAGGTTCATGA CCACGAGCAAGCGAGTTCAGGACAGGAGCAGGATGAAGAGAGTGCACGATCTCGAGATCGCGACGGAGAAGTGGAAAATCGTGTCCAAAGTGATGGCAGT CATGGAAATTTTGAAGCAGGAGCCGGAGATGATCATCCCGGTCAGGAACCTAGAACAGCATCGCCAGCGGCTCAACCTAACTAAGCCGAATAGAATCTCT GATTTCCTCCGCAAGTCTCCTAAGGTTTTTGAACTGTACAAGGACGAGAGAGGGCTGACGTGGTGTGGAATGACGGGACAAGCTGAGGAATTAGTGGAAG AACATGATAAACTAATTGAAGATCATTCGGATAAAGCTGCCGAGTACGTCACTAGGTGTCTTATGATGTCTGTTGACAAGCGGCTGCCATTGGACAAAAT CGCCACCTTCAGAAGGGATTTTGGTCTGCGGATTGATTTTAGAAACGATTGGGTGAACAAGTATCCTGAACTGTTTAAGGTCGTCAAGTCTGCTGATGGG GTTGACTACTTGGAGCTGGTGTCTTGGAACCCTGCTTGGGCCATTACGGAGTTAGAGAAGAAGGTGTTGGGGATAAATGAAGCTACTGGCCACGAACCTG GCATGCTTTCGTTGGCATTTCCTTTGAAGTTCCCTGCAAAATTTAAAAAGGTGTATAGGATTGGAGGGAAGCTTGAGCATTTCCAGAAATTGTCTTATCT GTCACCTTACGCAGATTCTTCTAAGGAGGGGTTGTTAACACCTGGGTCGCGAGAATTTGACAAGAGGGCAGTGGCTATAATGCATGAGCTACTTAGCTTT ACAGTTGAGAAGAGGCTGGGAATTTGTGATGCCACAAAAGTTGATGAGAATTCTGTTGAAACATTTTGGGATCTTTATGTGTCCGAGAGGGGGAAGAGGT TCAGTGCGTTCTTGACTGAAGCATACGAAGGGCCAGAACTGATTGATAAGTGCTTGTTGGTCCTTTGGAAGGAAAAACTCTTGCGTGTTGTTGGTTACAG AGGAAGGAAGGGGAGGGTTCCTACTTTCAGTGATTCGTCAGACATGGAGACTCCTGATACGGCGGGAAATGACTCTGAGGGCACAATAGAGGATGAAGAG GAATTACCAGAGGATGAGGGGGTAATGGATGGTTTGGTGGATTCTTTGGTTGCACAAAGATGA
AA sequence Show only first row Show all	>Lus10040797 pacid=23157729 polypeptide=Lus10040797 locus=Lus10040797.g ID=Lus10040797.BGIv1.0 annot-version=v1.0 MATRFLRSVSELQVFVYMPQRNGGGQLCQSRFMTTSKRVQDRSRMKRVHDLEIATEKWKIVSKVMAVMEILKQEPEMIIPVRNLEQHRQRLNLTKPNRIS DFLRKSPKVFELYKDERGLTWCGMTGQAEELVEEHDKLIEDHSDKAAEYVTRCLMMSVDKRLPLDKIATFRRDFGLRIDFRNDWVNKYPELFKVVKSADG VDYLELVSWNPAWAITELEKKVLGINEATGHEPGMLSLAFPLKFPAKFKKVYRIGGKLEHFQKLSYLSPYADSSKEGLLTPGSREFDKRAVAIMHELLSF TVEKRLGICDATKVDENSVETFWDLYVSERGKRFSAFLTEAYEGPELIDKCLLVLWKEKLLRVVGYRGRKGRVPTFSDSSDMETPDTAGNDSEGTIEDEE ELPEDEGVMDGLVDSLVAQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10040797 [exp]	0	1
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10016529 [exp]	4.4	0.8294
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	10.8	0.8665
					Lus10013907 [exp]	17.7	0.8325
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	18.0	0.8514
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	20.9	0.8513
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	22.6	0.8564
AT2G24550			unknown protein		Lus10020142 [exp]	25.9	0.8551
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	30.5	0.8509
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	32.4	0.8455
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	34.6	0.8427

Compare expression of checked genes

Lus10040797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.