Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59400 316 / 4e-108 unknown protein AT4G11960 72 / 2e-14 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT4G22890 69 / 5e-13 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016531 [exp] 591 / 0 AT5G59400 311 / 2e-106 unknown protein Lus10014135 [exp] 69 / 4e-13 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5) Lus10006710 [exp] 67 / 2e-12 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241400 [exp] 401 / 9e-142 AT5G59400 357 / 2e-124 unknown protein Potri.009G032300 [exp] 378 / 1e-132 AT5G59400 343 / 8e-119 unknown protein Potri.003G119200 [exp] 72 / 3e-14 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000 [exp] 67 / 2e-12 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040799 pacid=23157600 polypeptide=Lus10040799 locus=Lus10040799.g ID=Lus10040799.BGIv1.0 annot-version=v1.0 ATGGCCGGGGCGTGCTTCTCCACCGCTCGGCGACAGACCTTTCGTCCCGCCGCCGTCGTGGAGCTTTCTTCTAGGGCTGGCTCCCGGTCTGTAGCTTCCT TGCCGGTCCGAATCTCGGCTGGGGGAGATGCAGCGATGGCGACTTGCTGCAAGGCCGAGGGCCCGTCTTGTATCTACGTCGGACCTATTGAGACTGCCAG TAAAGAAACTCTGGAAGCTCTGTATCGTCAGGCACGGGAAGCATATTACAGTGGCTCGCCTTTGATAGTGGATGACATGTTTGATAGAGTAGAGTTGAAG CTCCGGTGGTACGGTTCGAAATCCGTTGTCAAGTATCCTCGCTGCAGCCTTAAACGACAGTCGACATACTCGGATGCTGAGGAAGATATCTCTCAGGCTT TCGCATTAGCAAGCATATGGTCGCTTTTTCTTACAATCGGAAGCTGTATTGCTGCTTGCCCCTTAATCTACGCCATCGGCATAGCTTATCAAGACGCGTT TGGTCCACCAATTTTACCCGGCGGTCAACAGACTGTGATAAAGTTCCTCTCCTCTGCCAATTTCTTTCTGTTCATGGCCGTTGGATACCTAATTGGCTAT CCAATTGTGTCAGCCTCAGTGAAAACGCTCAACGGACTGTGGAGGAATGATTTGGTTGCACTCAAGGGGGCTTGCCCAGACTGTGGTGAAGAGGTATTCG CTTTCGTGAAAACGAACCAGTCCAAAGACTCCTCGCCACATAGAGCAAGTTGCCATGTATGCGAAAGTGTGCTCGAGTTTCGAACAAACGTTGAGCAAAC CAAGTCAACGCTGGGAAGGCAATGGGTTTATGGTCGTATCTATCTCATGTCGAAACGGAGAAGAAGATGGAACAAGATATCGAATTAG
AA sequence Show only first row Show all	>Lus10040799 pacid=23157600 polypeptide=Lus10040799 locus=Lus10040799.g ID=Lus10040799.BGIv1.0 annot-version=v1.0 MAGACFSTARRQTFRPAAVVELSSRAGSRSVASLPVRISAGGDAAMATCCKAEGPSCIYVGPIETASKETLEALYRQAREAYYSGSPLIVDDMFDRVELK LRWYGSKSVVKYPRCSLKRQSTYSDAEEDISQAFALASIWSLFLTIGSCIAACPLIYAIGIAYQDAFGPPILPGGQQTVIKFLSSANFFLFMAVGYLIGY PIVSASVKTLNGLWRNDLVALKGACPDCGEEVFAFVKTNQSKDSSPHRASCHVCESVLEFRTNVEQTKSTLGRQWVYGRIYLMSKRRRRWNKISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59400			unknown protein		Lus10040799 [exp]	0	1
AT5G59400			unknown protein		Lus10016531 [exp]	1.0	0.9167
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	3.7	0.8836
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	4.6	0.8826
AT3G56010			unknown protein		Lus10040939 [exp]	4.9	0.8716
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	8.7	0.8248
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10041490 [exp]	9.5	0.8554
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	12.0	0.8564
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	12.4	0.8520
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	13.7	0.8607
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	15.3	0.8308

Compare expression of checked genes

Lus10040799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.