Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23260 84 / 1e-17 F-box and associated interaction domains-containing protein (.1) AT3G22650 82 / 4e-17 ATSFL61, CEG CEGENDUO, S-LOCUS F-BOX 61, F-box and associated interaction domains-containing protein (.1) AT3G21120 82 / 5e-17 F-box and associated interaction domains-containing protein (.1) AT3G17490 79 / 6e-16 F-box and associated interaction domains-containing protein (.1) AT3G23880 77 / 3e-15 F-box and associated interaction domains-containing protein (.1) AT3G21410 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) AT3G17540 76 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT3G17280 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT3G17570 74 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT4G22390 72 / 1e-13 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018008 [exp] 81 / 1e-16 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10009424 [exp] 75 / 2e-14 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10028961 [exp] 73 / 1e-13 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 68 / 3e-12 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 68 / 3e-12 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013873 [exp] 68 / 4e-12 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10031512 [exp] 67 / 6e-12 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10023372 [exp] 66 / 2e-11 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10011015 [exp] 65 / 3e-11 AT3G06240 94 / 7e-21 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058900 [exp] 92 / 2e-20 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G035500 [exp] 89 / 3e-19 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 81 / 1e-16 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 79 / 5e-16 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.006G170300 [exp] 78 / 2e-15 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.005G114900 [exp] 77 / 4e-15 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.008G199800 [exp] 76 / 9e-15 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 74 / 2e-14 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.012G014300 [exp] 74 / 3e-14 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.006G013000 [exp] 72 / 1e-13 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10040800 pacid=23157835 polypeptide=Lus10040800 locus=Lus10040800.g ID=Lus10040800.BGIv1.0 annot-version=v1.0 ATGCCTACCAAAAGAATAAGACACAACGATGTGATGAAGCTGCCGCCATTGCCGGAAGAAATCCAGACTGAGATTCTATTGAGATCGGATGTAAAATCTC TGATGCAGTTAAAGGTGGTATGCAAATCATGGAATTCCCTAGTCAAAGACCCATCTTTCATCTCCCAGCACAAAACCCTACAGACTAAAGAAAGCTCCAC CAGAATTCTCATGGTGCCAAGGTCAGGAGAATCATCATCATTCAACCTCCCAAACTTACCCTTGGTAAACATAATGGACATCAACACTAATGAACACGAG GGCAAGTTAACCGCAAGAATCCTGACCCATTCATGTGAAGGATTGTTCCTGGTCGGATATTACAACCGCGACAACGTTGAAATCCCAGAGTATCTCGCCA TAGTTAACCCTGCCACTAGAGAGAAGAGGCTGCTGCGGAAATCCAATCGATTTACTGGACGGTCAATTAGTGACGCGTTTTACGGGTTTGGATACGATTC GGAGACTAAAGATTACAAAGTCGTGAGAATGTTTCATCTTATTGCTGATATAGGTGAAATTGAGGGCGGAGCAGAGGTGTACTCGATCAGCAGCGATTCA TGGAGACAAGTACACGATATGGATGCCCGAACTACAAGCCTGCTACGATGTTCGATTGATCAATACTCTGTATACGCAGCGGGGTCATCCCATTGGTTAA TGTCATCGTATTGGTTCAGGGGCGGGACCCGTGGCATCGTGTCATTCGATTTTCGTTGCGGAATCTTCATATACGCTCCTCTGCCTCTTCGACTCGGGCG ACACTTTAACTACGGTATCCTTCCGATGAACGACGACGATGATGGTTCGATCACCCTACTCATGTATAGTGAATTCAGTCGCGGCGACGAAAGAAGAAGC ACGTGCCGCAGTTTGGAGAGGGTGAAAATAGTACCATCTGATCAAGATGAAGGGAAAGGGTGGTCATGGAAGAACATGAAAAGGATGGAATTGGAAACGG TAAACGATGGACATCCTGGTTGGAGTTCGCGGTTTGGCGGGGATGATCGTATCTTGTTCGAGAGGCGTCCGAATTGTTATTGGGTGCTTCATGACGTCTA CCCTACAATACCGATGATGAGAGTTGATGATATATTTATCTACCGGGAAAGACTCACTACGTTTGTTCCTCATCGGACACTACAACCACAACCAACTTCA CTACAACGACAGCGCTGA
AA sequence Show only first row Show all	>Lus10040800 pacid=23157835 polypeptide=Lus10040800 locus=Lus10040800.g ID=Lus10040800.BGIv1.0 annot-version=v1.0 MPTKRIRHNDVMKLPPLPEEIQTEILLRSDVKSLMQLKVVCKSWNSLVKDPSFISQHKTLQTKESSTRILMVPRSGESSSFNLPNLPLVNIMDINTNEHE GKLTARILTHSCEGLFLVGYYNRDNVEIPEYLAIVNPATREKRLLRKSNRFTGRSISDAFYGFGYDSETKDYKVVRMFHLIADIGEIEGGAEVYSISSDS WRQVHDMDARTTSLLRCSIDQYSVYAAGSSHWLMSSYWFRGGTRGIVSFDFRCGIFIYAPLPLRLGRHFNYGILPMNDDDDGSITLLMYSEFSRGDERRS TCRSLERVKIVPSDQDEGKGWSWKNMKRMELETVNDGHPGWSSRFGGDDRILFERRPNCYWVLHDVYPTIPMMRVDDIFIYRERLTTFVPHRTLQPQPTS LQRQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21120			F-box and associated interacti...		Lus10040800 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006687 [exp]	6.1	0.8131
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031589 [exp]	6.3	0.6874
					Lus10010116 [exp]	9.6	0.7782
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10042838 [exp]	13.0	0.6809
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	18.8	0.7309
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	20.5	0.7489
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	27.3	0.7105
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	30.3	0.6953
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	31.2	0.6911
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	33.1	0.6862

Compare expression of checked genes

Lus10040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.