Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31380 96 / 7e-26 FLP1 FPF1-like protein 1 (.1) AT5G10625 91 / 2e-24 unknown protein AT5G24860 89 / 8e-24 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000506 [exp] 104 / 5e-30 AT5G24860 142 / 2e-45 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10037510 [exp] 103 / 1e-29 AT5G24860 139 / 4e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10020156 [exp] 93 / 2e-25 AT5G24860 180 / 4e-60 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10026956 [exp] 88 / 2e-23 AT5G24860 174 / 5e-58 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10016534 [exp] 70 / 9e-17 ND 37 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031600 [exp] 179 / 2e-59 AT5G24860 114 / 6e-34 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.008G209300 [exp] 105 / 2e-30 AT5G24860 140 / 1e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.010G024500 [exp] 105 / 3e-30 AT5G24860 139 / 4e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.018G005200 [exp] 100 / 1e-28 AT5G10625 165 / 2e-54 unknown protein Potri.006G276100 [exp] 100 / 3e-28 AT5G10625 167 / 5e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040802 pacid=23157871 polypeptide=Lus10040802 locus=Lus10040802.g ID=Lus10040802.BGIv1.0 annot-version=v1.0 ATGTCCGGCGTCTGGATATTCGACCGGCAAGGAGTCGCCCGACTCATATCCCACCCGACCCGCGAGTCCTTCGAGCAGAGAGACCACCACCACAACCACA ACCACCATGGGACGGCCACGGCCCCTGGTGCTAGGCCACGTGTCCTGGTCTACCTCCCGGAAGACCAGGTAATCAAGTCGTACGACCAGCTCGAGCAGCG ACTGGGCGAGCTCGGGTGGACCCGGTATCAAAGACCGGACAGGAAGGATAACGGGTTGGTTCAGTTTCACAGGTCTGATTCGTGCGCTCATCTCATCTCT TTGCCTACGAGGTTTTCGAGCATCAAGCCTTTCCATATGTACGACCTCGTCGTCAAGAACCGCTCCTTCTTTGAAGTTCGTGATGTCCCTAATTACTAG
AA sequence Show only first row Show all	>Lus10040802 pacid=23157871 polypeptide=Lus10040802 locus=Lus10040802.g ID=Lus10040802.BGIv1.0 annot-version=v1.0 MSGVWIFDRQGVARLISHPTRESFEQRDHHHNHNHHGTATAPGARPRVLVYLPEDQVIKSYDQLEQRLGELGWTRYQRPDRKDNGLVQFHRSDSCAHLIS LPTRFSSIKPFHMYDLVVKNRSFFEVRDVPNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	1.0	0.9761
AT4G10950			SGNH hydrolase-type esterase s...		Lus10000876 [exp]	5.3	0.9217
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10035955 [exp]	7.3	0.9227
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	11.1	0.9306
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	13.0	0.9190
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	14.2	0.9269
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	15.0	0.9265
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028670 [exp]	16.2	0.8842
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	17.9	0.9239
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	18.8	0.7990

Compare expression of checked genes

Lus10040802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.