Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18200 335 / 3e-115 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016535 [exp] 484 / 9e-175 AT5G18200 434 / 1e-153 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034400 [exp] 358 / 1e-124 AT5G18200 414 / 4e-145 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1) Potri.006G233200 [exp] 348 / 2e-120 AT5G18200 466 / 1e-165 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01087 [flax] [poplar] GalP_UDP_transf Galactose-1-phosphate uridyl transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040803 pacid=23157822 polypeptide=Lus10040803 locus=Lus10040803.g ID=Lus10040803.BGIv1.0 annot-version=v1.0 ATGGCGGCACCTACAGGTAGGGTACCTGAATTGAGGCACGACCCGGTCTCCAACCGATGGGTCGTTTTCTCCCCCGCAAGGGCCAAGCGCCCTTCCGATT TCAAATCCAAGTCCCCGGAGAACCACCCTGATCCCAATTCCTCCGCTGCTAATTCATGCCCGTTCTGCATAGGCAACGAGAGCCATTGTGCCCCTGAGAT CTTCCGGTTCCCTCCCAATCAACCGAACTGGAAGATCAGGGTCATTGAGAATCTCTACCCCGCCCTCAGCCGAATCGCGGAGGACGATAAGAAGCAGCAG CAGCTGCACGATCACGCCGCTGGTGGACGGAGCTTGAGCGGATTGGGGTTCCACGATGTGGTGATAGAGGTTCCAGTTCACACCGTGCAGTTGAGCGATT TGGGAGCTGGAGAGATTGGCGAGGTCTTGCTTGCCTATAAGAAGAGGATTCTACAGATTGCAAGCTTTGATTCGATCAAATACGTCCAGATATTCAAGAA CCATGGAGCTTCAGCTGGTGCATCTTTGAGCCACTCGCACAGTCAAATACTGGCTCTACCCATCATTCCTCCTGCTGTTTCTGCAAGACTTGATGGTACA AAGGAGTACTTCAACAAGACAGGGAAGTGCAGCTTGTGTGAAATTCAAAGCAAGGAGCTTTTGATCAACGAATCAACCCATTTCATATCGATTGTCCCCT TCGCCGCGACATTCGCTTTCGAGATATGGATCGTTCCAAGGGTTCATTCGTCTCATTTTCACGAACTAGACTCTGATAAGGCAGCCGATCTCGGGGGATT GCCGAGGATGCTGCAAAGGTTCTAA
AA sequence Show only first row Show all	>Lus10040803 pacid=23157822 polypeptide=Lus10040803 locus=Lus10040803.g ID=Lus10040803.BGIv1.0 annot-version=v1.0 MAAPTGRVPELRHDPVSNRWVVFSPARAKRPSDFKSKSPENHPDPNSSAANSCPFCIGNESHCAPEIFRFPPNQPNWKIRVIENLYPALSRIAEDDKKQQ QLHDHAAGGRSLSGLGFHDVVIEVPVHTVQLSDLGAGEIGEVLLAYKKRILQIASFDSIKYVQIFKNHGASAGASLSHSHSQILALPIIPPAVSARLDGT KEYFNKTGKCSLCEIQSKELLINESTHFISIVPFAATFAFEIWIVPRVHSSHFHELDSDKAADLGGLPRMLQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10040803 [exp]	0	1
AT3G59390			unknown protein		Lus10040180 [exp]	4.1	0.8120
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	4.5	0.8332
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	4.8	0.8624
AT1G68140			Protein of unknown function (D...		Lus10020957 [exp]	10.7	0.8062
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	14.1	0.8483
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	18.5	0.7868
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	21.6	0.8343
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	24.3	0.8317
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	24.4	0.8248
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10028374 [exp]	25.1	0.8204

Compare expression of checked genes

Lus10040803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.