Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28940 541 / 0 Protein kinase superfamily protein (.1.2) AT3G09830 424 / 3e-146 Protein kinase superfamily protein (.1.2) AT5G03320 415 / 9e-143 Protein kinase superfamily protein (.1) AT2G39110 394 / 2e-134 Protein kinase superfamily protein (.1) AT3G28690 336 / 2e-112 Protein kinase superfamily protein (.1.2.3) AT5G15080 339 / 5e-112 Protein kinase superfamily protein (.1) AT5G47070 334 / 4e-111 Protein kinase superfamily protein (.1) AT3G01300 335 / 2e-110 Protein kinase superfamily protein (.1) AT4G17660 327 / 9e-109 Protein kinase superfamily protein (.1) AT3G55450 311 / 1e-102 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016536 [exp] 759 / 0 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 445 / 1e-153 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 433 / 1e-148 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001088 [exp] 345 / 5e-116 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10030668 [exp] 347 / 8e-115 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10040135 [exp] 342 / 9e-115 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10005255 [exp] 345 / 2e-114 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 318 / 2e-105 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030796 [exp] 322 / 3e-105 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031500 [exp] 604 / 0 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 603 / 0 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 434 / 6e-150 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 434 / 6e-150 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 434 / 2e-149 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 378 / 6e-128 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 365 / 8e-124 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 351 / 2e-117 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 348 / 2e-115 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 343 / 1e-113 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040804 pacid=23157678 polypeptide=Lus10040804 locus=Lus10040804.g ID=Lus10040804.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTCCACTTCTCCAACGGCGGCGGGGCCGCGCCCGCCCCATCAACCGCCACACGCCGACGCGGCGGCAGCCGCTGCGAGGCCGGCGCCGGCG GCGGCGGCGCCGCTTCTTCTAGAAACTCGCGGATGTCGTGGGCGAGGTCGTTGAGCGTGGCCTCTACTAACGTCGACACCAGGAGAGGCTCGTCGGACTT GTACTGCTACTCCTCTAGAGACTTGTCCGAATCCGTCGCCTTCTACGATTTCTTATCACATCGGAGAGCCAACGATTTGCACGTCTTCTCCTTCGCCGAG CTCAAAGCGGCGACCAAGGGGTTCAGCAGGTCGCTTTTGATCGGAGAGGGAGGATTCGGTTGCGTCTACCGCGGTGTCGTTAGGGTTCCTAATTGCGTTT ACGGGTTCCTAATTGCGTTGACGACGGCTGTGATTCAGAGACTGTTACAGGGACACAAAGAGTGGATCAACGAGGTGAATTTCTTGGGCGTGGTTAGCCA TCCGAATTTAGTGAAGTTGGTTGGATATTGCGCTGAAGATGACGAAAGAGGGATGCAGAGGCTCCTGGTTTATCAGCTCATGCGTAACAAGAGCTTGGAA GATCATCTCTTAACTCGAACTCCTTCGCCTCTTCCGTGGATCACAAGGTTGAAGATTGCTCAAGATGCTGCTCGTGGATTGGCTTACCTCCATGAAGAAA TGGATTTTCAGCTGATATTTCGAGATTTCAAGGCGTCCAACATCCTGCTAGATGAAGATTTCAATGCCAAGCTATCAGATTTTGGTTTAGCCAGACAGGG TCCTCCTGAAGGGCTCAGCCATATCTCAACTTCAGTTGTGGGAACAGTTGGTTATGCAGCACCAGAGTATGTACAGACCGGAAGGCTGACAGCGAAGAGC GATGTGTGGAGTTTTGGAGTGGTTATCTACGAGCTTATTACAGGCAGGAGGGTGATGGAGAGAAACCTACCAAGGGGAGAACAGAAGCTCTTGGAATGGG TTCGGCCATTCGTATCCGATCCAAAGAAGTTTCATCTCATCGTAGATGCCCGGTTGGAAGGAAAATACTGCCTTCGATCGGCGCAGAGAGCAGCAGGATT GGCAAACAAATGTCTCAGCAGACAGCCCAAGTCCAGGCCTAGAATGAGCGAAGTGGTTGAGTTGTTGGGGAACATCATCAGCGAGACATCAATCGAGGAA GAGGAGGAAACTGCTGGATCCAAAATTGAAAAGGTTAAAGAGGAGAACCCAATAGTGGCCGAGCCAGAGTGCAGCAGTAAGAGCAGAAACAGATACCTGA AGAAAGTTTTGGATATGAGAGAGTTCAAGAGCTTTAGGTCGATTGGGAAGCAGCTAGATTGGAGAAACTGGACTCCTGGTCTCATAAGAAGTTCATAA
AA sequence Show only first row Show all	>Lus10040804 pacid=23157678 polypeptide=Lus10040804 locus=Lus10040804.g ID=Lus10040804.BGIv1.0 annot-version=v1.0 MKCFHFSNGGGAAPAPSTATRRRGGSRCEAGAGGGGAASSRNSRMSWARSLSVASTNVDTRRGSSDLYCYSSRDLSESVAFYDFLSHRRANDLHVFSFAE LKAATKGFSRSLLIGEGGFGCVYRGVVRVPNCVYGFLIALTTAVIQRLLQGHKEWINEVNFLGVVSHPNLVKLVGYCAEDDERGMQRLLVYQLMRNKSLE DHLLTRTPSPLPWITRLKIAQDAARGLAYLHEEMDFQLIFRDFKASNILLDEDFNAKLSDFGLARQGPPEGLSHISTSVVGTVGYAAPEYVQTGRLTAKS DVWSFGVVIYELITGRRVMERNLPRGEQKLLEWVRPFVSDPKKFHLIVDARLEGKYCLRSAQRAAGLANKCLSRQPKSRPRMSEVVELLGNIISETSIEE EEETAGSKIEKVKEENPIVAEPECSSKSRNRYLKKVLDMREFKSFRSIGKQLDWRNWTPGLIRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	0	1
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	1.0	0.8805
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	1.4	0.8179
AT4G14600			Target SNARE coiled-coil domai...		Lus10036461 [exp]	1.7	0.7769
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10002650 [exp]	5.4	0.7018
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	12.0	0.7468
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	12.8	0.7632
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	15.3	0.7500
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	15.8	0.7527
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	17.0	0.7311
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10000782 [exp]	19.6	0.7494

Compare expression of checked genes

Lus10040804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.