Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 532 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 527 / 0 APK1B protein kinase 1B (.1.2.3) AT5G02290 476 / 9e-168 NAK Protein kinase superfamily protein (.1.2) AT2G39660 444 / 4e-155 BIK1 botrytis-induced kinase1 (.1) AT2G02800 442 / 3e-154 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 419 / 9e-145 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 416 / 3e-144 PBL1 PBS1-like 1 (.1.2) AT1G69790 400 / 6e-138 Protein kinase superfamily protein (.1) AT3G01300 399 / 2e-136 Protein kinase superfamily protein (.1) AT1G26970 396 / 3e-136 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016537 [exp] 757 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 546 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 541 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 511 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 509 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10023794 [exp] 507 / 1e-180 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 501 / 9e-178 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 501 / 2e-177 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012850 [exp] 434 / 9e-151 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240400 [exp] 573 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 558 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 516 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 511 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 500 / 4e-177 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 452 / 6e-158 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 447 / 5e-156 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G033800 [exp] 410 / 1e-140 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 410 / 1e-140 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 409 / 3e-140 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040806 pacid=23157886 polypeptide=Lus10040806 locus=Lus10040806.g ID=Lus10040806.BGIv1.0 annot-version=v1.0 ATGGGGGCTTGCTTAAGTGCCCAGATTAAAGCCGAGAGCCCTATTAACACAGGGGCGAGTTCGAGGCACGTAAGTTGCGACGCCAATGGATCGGGAAAGG GGGCGAGTCCTCCGAACTACGTTGGCTGCGAAAGCAACAATGGAAATCTATCAGTGCCTCAAACTCCAAGGAGTGAGGGTGACATACTGCAGTCTCCTAA TTTGAAGAGCTTCAGTTTTGCTGATCTTAAGCAAGCCACCAGGAATTTTCGACCGGATAGTGTGGTAGGCGAAGGTGGGTTTGGTTCGGTTTTCAAAGGA TGGATTGACGAGATTACGTTCACTGCAACCAAACCCGGAACCGGATTGGTCATAGCTGTCAAAAGGCTGAACAAGGAAAGCTACCAAGGTCACAAGGAGT GGCTGACTGAAGTCAACTACTTGGGACAATTCTGCCATCCTCATTTGGTCAAGCTCATTGGCTATTGCTTGGAAGACGAGCATCGCCTTCTCGTTTACGA GTTCATGCCTCGCGGAAGCTTGGAGAATCATCTCTTCAGAAGAGGCTCTTATTTCCAGCCTCTTTCATGGAACCTAAGGTTGAAGGTTGCTCATGGTGCT GCAGAGGGGCTTGCTTTCCTTCACAGCTCCCAAGCAAAGGTCATTTATCGCGATTTCAAGACTTCTAACATCTTGCTTGATACAAAGTATGATGCTAAAC TCTCCGATTTCGGATTAGCCAAGGATGGTCCGACCGGGGACAAGAGTCATGTGTCCACAAGGATTATGGGAACATATGGTTATGCTGCTCCTGAGTACCT TGCCACAGGACATTTGACACCAAGGAGCGACGTGTTCAGCTTTGGAGTGGTGTTGCTAGAGATGTTATCAGGGAGGAGAGCGATCGACAAAAACCGGCCA TCGGGGGAGCACAATCTTGTGGAATGGGCTAAACCGTACATCGGGAGCAAGCGCAAGGTGTTCAAGATCCTGGACAATCGGCTTGAAGGGCAATACACGA TGGAAGTAGCGTTCAAGGCTGCTTCACTTGCGTTGAGGTGCATTTCAATAGAGGCCAAGCTGCGACCGAATATGGAAGAGGTGGTGAGGATCTTGGAGGA CATCATTGAGTCGAACGAGATGAGCAACAACTCGAGCGATCAGGCGAATAGTGCACCAACAAAGTGGCGGAGAAGAAGCGCGGATGATGCTAGTCGCAGG AGAAGGATCAGTGGCGCGTATAGCCGCCCCACTGCTTCTCCTCAACATGCTTGA
AA sequence Show only first row Show all	>Lus10040806 pacid=23157886 polypeptide=Lus10040806 locus=Lus10040806.g ID=Lus10040806.BGIv1.0 annot-version=v1.0 MGACLSAQIKAESPINTGASSRHVSCDANGSGKGASPPNYVGCESNNGNLSVPQTPRSEGDILQSPNLKSFSFADLKQATRNFRPDSVVGEGGFGSVFKG WIDEITFTATKPGTGLVIAVKRLNKESYQGHKEWLTEVNYLGQFCHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWNLRLKVAHGA AEGLAFLHSSQAKVIYRDFKTSNILLDTKYDAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTPRSDVFSFGVVLLEMLSGRRAIDKNRP SGEHNLVEWAKPYIGSKRKVFKILDNRLEGQYTMEVAFKAASLALRCISIEAKLRPNMEEVVRILEDIIESNEMSNNSSDQANSAPTKWRRRSADDASRR RRISGAYSRPTASPQHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	1.4	0.8901
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	1.4	0.8728
AT1G67620			Lojap-related protein (.1)		Lus10015822 [exp]	3.0	0.8716
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	5.7	0.8471
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	7.4	0.8521
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	7.9	0.8393
					Lus10038131 [exp]	8.0	0.8098
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	8.1	0.8614
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	8.7	0.8712
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	11.8	0.8474

Compare expression of checked genes

Lus10040806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.