Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 482 / 1e-167 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 440 / 2e-151 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 413 / 5e-140 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 392 / 3e-134 Glycosyl hydrolase superfamily protein (.1) AT2G39640 399 / 7e-134 glycosyl hydrolase family 17 protein (.1) AT4G34480 382 / 9e-128 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 341 / 2e-112 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 331 / 1e-108 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G42720 314 / 2e-102 Glycosyl hydrolase family 17 protein (.1) AT4G26830 309 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016539 [exp] 980 / 0 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 678 / 0 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 488 / 3e-170 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10005459 [exp] 471 / 2e-165 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10021088 [exp] 432 / 1e-149 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 422 / 3e-144 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 396 / 3e-134 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 390 / 1e-131 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 389 / 3e-131 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240000 [exp] 645 / 0 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 517 / 0 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 508 / 3e-178 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 480 / 4e-167 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 424 / 7e-145 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 414 / 5e-141 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 408 / 7e-139 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 394 / 3e-133 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 358 / 4e-120 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 339 / 8e-112 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10040808 pacid=23157820 polypeptide=Lus10040808 locus=Lus10040808.g ID=Lus10040808.BGIv1.0 annot-version=v1.0 ATGGCTCAAACTTCTCTCATCTTCCTCCTCCTCCTATCCTACATCTTCATTTCTCCATCCACCGCCTCATACTCAATCGGAGTGAACTACGGAACATGGG GCGACAACCTCCCACCGCCATCCCAAGTAGCAGAGTTCCTCAAAACCCACACTACCATCGACCGAATCAAAATGTTCGACGCGAACCCCGACATCATCCG CGCCTTCGCTGACACCGGGATCTCAGTCACGGTCACCGTCGCGAACGCCGACGTCCCTGCACTCTCCAAGCTCCCCGCCGCACAGGACTGGATCGCGGCC AACATCCTCCCCTTCCACCCGCAAACAACCATCCGCTACATCTTGGTTGGGAACGAGGTCCTTTACTGGAAGGACAGGAACGTAATTGCATACACCCTCC CGGCGATGAAGACCGTGCACCACGCCTTGCAGTTAGCGAATCTCACGGATATCAAGGTTACAACTCCCCACGCGCTCTCGTTCCTCGCCGCGTCGGAGCC TCCCAGCACTGGGGTGTTCAAGAAGTTCGACGGGGAGATCCTCGAGCCGATCCTGGACTTCCACCGCCGGACGAAGACCCCGTTTATGGTGAACCCGTAC CCGTTCTTCGGGTACCGGGACGAGGTGAAGGATTACGCCGTATTCCGGCCGAGTAAAGGGCTGTACGATAAGCATACGGGGATAAATTACACGAATATGT TTGACGAGCAGATGGATGCGGTTTATTCCTCGATGAAGAAGCTTGGAAAGGGGTATGAAGAGGATGTTGAAATTGTGATTGGGGAGACGGGTTGGCCGTC GGCGGGTGACCCGAACCAGCCCGGTATTAGCTTGGAGAATGCGCTGTCGTATAACGGGAACGTGGTGAAGCATGTGAACTCCGGGAAAGGGACGCCGTTG ATGCCGAATCGGACTTTTGAGACTTACATGTTTGCTCTGTTCAACGAGAATCTCAAGGCTTCGATCTCGGAGAAGAATTATGGGCTGTTCAAGCCTGATT TCACTGCCGTGTACGACGTCGGCGTTATGCGCAGCACGCCGGCACAAGCTCCTCCGACGAGCAACGGAACTACCTCTCCGGGGAAGGCACCGCCGTCCGA CGGAACCAATCCAGCCCCGGCGGAGAAGCAATGGTGCGTGCCGACATCCGATGCCAGCGATGAAGCATTACAAAAGAATCTGGACTACGTGTGCAGCTTG GGAGTGGATTGCCAGCCGATACAGGACGGTGGAGTTTGTTTCAGCCCCAATACAGTCCGGTCACACGCGTCGTACGCGATGAACGCCTACTATCAAACCT ACGGCCACCACTATTTCAACTGTGACTTCGACCGCACCGGAGTTGTAACCTCCACCGATCCAAGTTACGAGGCGTGCAGCTATCCGTTGACCGGTATGGA ATTGTTGGAGGTGAAGAAGTCGGTGGTCAAGTCTCTGTCGCCGAGATTGGTTGGGTTGGCATTTACTGAGTTGCTTGTGGCGGCGGGTTTCGTGGTGTCT TTGTTGTTCCACTTTGTTGTCTGA
AA sequence Show only first row Show all	>Lus10040808 pacid=23157820 polypeptide=Lus10040808 locus=Lus10040808.g ID=Lus10040808.BGIv1.0 annot-version=v1.0 MAQTSLIFLLLLSYIFISPSTASYSIGVNYGTWGDNLPPPSQVAEFLKTHTTIDRIKMFDANPDIIRAFADTGISVTVTVANADVPALSKLPAAQDWIAA NILPFHPQTTIRYILVGNEVLYWKDRNVIAYTLPAMKTVHHALQLANLTDIKVTTPHALSFLAASEPPSTGVFKKFDGEILEPILDFHRRTKTPFMVNPY PFFGYRDEVKDYAVFRPSKGLYDKHTGINYTNMFDEQMDAVYSSMKKLGKGYEEDVEIVIGETGWPSAGDPNQPGISLENALSYNGNVVKHVNSGKGTPL MPNRTFETYMFALFNENLKASISEKNYGLFKPDFTAVYDVGVMRSTPAQAPPTSNGTTSPGKAPPSDGTNPAPAEKQWCVPTSDASDEALQKNLDYVCSL GVDCQPIQDGGVCFSPNTVRSHASYAMNAYYQTYGHHYFNCDFDRTGVVTSTDPSYEACSYPLTGMELLEVKKSVVKSLSPRLVGLAFTELLVAAGFVVS LLFHFVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	0	1
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	1.4	0.9538
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	1.7	0.9481
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	2.0	0.9495
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	2.4	0.9443
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	2.8	0.9469
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	2.8	0.9436
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	3.3	0.9399
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	3.6	0.9393
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	3.9	0.9380
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	4.2	0.9433

Compare expression of checked genes

Lus10040808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.