Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28910 190 / 3e-58 CXIP4 CAX interacting protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016543 [exp] 246 / 4e-80 AT2G28910 213 / 6e-67 CAX interacting protein 4 (.1) Lus10004961 [exp] 178 / 2e-53 AT2G28910 182 / 3e-55 CAX interacting protein 4 (.1) Lus10005458 [exp] 176 / 9e-53 AT2G28910 184 / 9e-56 CAX interacting protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148000 [exp] 204 / 2e-63 AT2G28910 199 / 2e-61 CAX interacting protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040809 pacid=23157920 polypeptide=Lus10040809 locus=Lus10040809.g ID=Lus10040809.BGIv1.0 annot-version=v1.0 ATGCCGGCCACAGCTGGAAGGGTTCGCATGCCTGCAAACAACAGAGTGCATAGTAGTGCTGCCCTTCAGACTCACGGTATATGGCAGAGTGCCATTGGTT ATGACCCTTATGCCCCCAACAAGGATGACGCAAAAGCTTCAGCACAGCCAAAAGCATCGGCTGCCGAACCTGACAGCGAGAATGCTTACACTAGTTTCCA GGATCTTATGGCACTTGCACGTATCACCGGCTCCAATGCCGATGAGGTCCGTGGTGCTTGCAAAAGATGTGGACGGGTCGGACACCTCACTTACCAATGT CGAAACTTCCTCAGCTCAAAGGACAAAGACCCTGCAGCAATTCACGCTGCAGCTTTGTCAGGATTGAACAAAATAAAGGGGAATACTAAAGGGGATAGTG ATGACGAAAGTGAAGAAGAGGAGGAGAGTGAGACTTCTGATTCGGAAGTTGATCCAGAGATGGAGAGGATCATATCCGAAAGATATGGGAAGAAGAATAG TGGGAAGTCGAAGTCTTCCAAGAAGAAGAATAGTGGGAAGACGAAGTCTTGCAAGAAGAAGAAAGAGGATTCGGATGAAGAGAGCGAGGATTCTGATACG GAGAAGAGGAGGAAGAGAGGAAGATCGAAGAAAAGGAGGAGCAGGAAGAGTGGAAGTAGCGACTCGGAGGATGACAGTAAGAGCAGGGGACGCAGAATGG AGAAGAGAAGAAAGAGAGATGATTCTTCTTCTGACGAAGAGGAAAAAGTGTGTCGTAAGAAAAGTCGGAAAGAGAGGAGAAGGAGACGGAGTCGTCGTCA TTCTGATGATTCTGATACCGACTCATCCGAGGACTCTCGACAGGAGAGCAGGAAGGCTCATCGACTTCTGGCTCGAGTGACTCAGAGGATGATTCAAGGG CAGGGCTGGAAGAAGAGTTCAAAGAGGTCTGAGAAGAAAAGCAGGAAGCTACAGAATGGTAGAGAATAA
AA sequence Show only first row Show all	>Lus10040809 pacid=23157920 polypeptide=Lus10040809 locus=Lus10040809.g ID=Lus10040809.BGIv1.0 annot-version=v1.0 MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDAKASAQPKASAAEPDSENAYTSFQDLMALARITGSNADEVRGACKRCGRVGHLTYQC RNFLSSKDKDPAAIHAAALSGLNKIKGNTKGDSDDESEEEEESETSDSEVDPEMERIISERYGKKNSGKSKSSKKKNSGKTKSCKKKKEDSDEESEDSDT EKRRKRGRSKKRRSRKSGSSDSEDDSKSRGRRMEKRRKRDDSSSDEEEKVCRKKSRKERRRRRSRRHSDDSDTDSSEDSRQESRKAHRLLARVTQRMIQG QGWKKSSKRSEKKSRKLQNGRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	0	1
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	3.6	0.8912
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	4.5	0.8702
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	5.3	0.8521
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10034249 [exp]	6.9	0.8207
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	7.9	0.8794
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	9.8	0.8541
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	11.2	0.8437
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	12.5	0.8725
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	12.7	0.8381
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	13.0	0.8469

Compare expression of checked genes

Lus10040809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.