Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28900 141 / 7e-44 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) AT4G16160 54 / 1e-09 ATOEP16-2, ATOEP16-S Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016545 [exp] 242 / 2e-83 AT2G28900 185 / 4e-61 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239900 [exp] 145 / 2e-45 AT2G28900 178 / 2e-58 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10040810 pacid=23157860 polypeptide=Lus10040810 locus=Lus10040810.g ID=Lus10040810.BGIv1.0 annot-version=v1.0 ATGCCGAGCAGCAGCTTTACTGGGTCGTTAACTACTCCCACTGTTGGTGTGGCAATCGACACCGGCAACCCCGTACTCGACCTCACCGTCGATGGTTTCT TGAAGACCGCCGGTGTGGCCGCAGTAAGGGTACTCGCTGATGACACCTTTCACTCCGTCAAAAAAGGGTCACTCTCAGGAAGTGATATTGAGAAATCGCT GAAAAAGATGTGCAAGGAAGGTGCTTACTGGGGGGCAGTAGGTGGAGTTTACGTGGGGGTGGAATATGGGATGCAGAGGATCCGAGGAAGAAATGACTGG AAAAATGCAATGCTAGGAGGGATGGCGACTGGAGCGCTGATGTCGGCAGCCACCAGCGATAGCACGGACAAGGTTATCAGTAATGCTATAACTGGAGGCG CCATTGCCACTGCTTGCAAGTTCCTCAACCATCTCATCTGA
AA sequence Show only first row Show all	>Lus10040810 pacid=23157860 polypeptide=Lus10040810 locus=Lus10040810.g ID=Lus10040810.BGIv1.0 annot-version=v1.0 MPSSSFTGSLTTPTVGVAIDTGNPVLDLTVDGFLKTAGVAAVRVLADDTFHSVKKGSLSGSDIEKSLKKMCKEGAYWGAVGGVYVGVEYGMQRIRGRNDW KNAMLGGMATGALMSAATSDSTDKVISNAITGGAIATACKFLNHLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	0	1
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	1.0	0.8969
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	1.4	0.8677
AT1G73820			Ssu72-like family protein (.1)		Lus10024545 [exp]	3.9	0.8493
					Lus10043166 [exp]	5.5	0.8131
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	6.0	0.8372
AT4G23900			Nucleoside diphosphate kinase ...		Lus10001824 [exp]	6.8	0.8178
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	7.2	0.8549
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	11.6	0.8249
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	12.4	0.8265
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	12.7	0.8582

Compare expression of checked genes

Lus10040810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.