Plant FIBer expression Database

Lus10040812 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71780 212 / 2e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016547
[exp]
329 / 8e-117 AT1G71780 208 / 5e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G062300
[exp]
223 / 5e-75 AT1G71780 225 / 1e-75 unknown protein
PFAM info
Representative CDS sequence
>Lus10040812 pacid=23157616 polypeptide=Lus10040812 locus=Lus10040812.g ID=Lus10040812.BGIv1.0 annot-version=v1.0
ATGGCGACGGCGGGCGAAGAGATCAGAGAACTGGAAGAGACGAGCACGGAGACGACGCCGCTCATCGGAGCGGACAACTCGGAACCTGCTAGGGCGCCGG
TGCCGGAGGCCGAGATTCATCTTTATCGGAAAGGCAAGGGTCCGATCGAAGTTTTCAAGACGAAATTGGGAGGATGGGAACAAGATCAGCTGGAGGTGCG
AGACATCCTCGAAAAGTACGGGTTCAAGAGCGTCTATGCTTTCAATCCCGGGTCGGCGACCCGGGGCACTCCGATCCGGTTCAACCCTAGGAACGGGATG
TCCAAGCTTGGGTATAAGGATGGAGCCGTGATCTACGTCGACGGCGAGCCACAGGACTCGATGATAAAACCGGTGACAAAAATCCTATTTGGGGTAGCAG
TAATAACCTTCCTGATAACCGTCCTTGTGAGAGAACCTCCTGCATGGCTCAAGAACTCCAAAGTCTTTGAGGGGAACTTCAACCCTTGGATCCTTGCTTT
GGCGGTTATTGTTTTCACTCGAATCAGTAAAAGAACCAAGAACTTCTTCGAGAAGCGCAGCCAGTAA
AA sequence
>Lus10040812 pacid=23157616 polypeptide=Lus10040812 locus=Lus10040812.g ID=Lus10040812.BGIv1.0 annot-version=v1.0
MATAGEEIRELEETSTETTPLIGADNSEPARAPVPEAEIHLYRKGKGPIEVFKTKLGGWEQDQLEVRDILEKYGFKSVYAFNPGSATRGTPIRFNPRNGM
SKLGYKDGAVIYVDGEPQDSMIKPVTKILFGVAVITFLITVLVREPPAWLKNSKVFEGNFNPWILALAVIVFTRISKRTKNFFEKRSQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71780 unknown protein Lus10040812
[exp]
0 1
AT4G05530 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDU... Lus10015542
[exp]
2.4 0.8414
AT2G35900 unknown protein Lus10021249
[exp]
2.6 0.8415
AT3G07870 F-box and associated interacti... Lus10012355
[exp]
3.5 0.8203
AT5G64920 CIP8 COP1-interacting protein 8 (.1... Lus10031422
[exp]
9.2 0.8044
AT4G18372 Small nuclear ribonucleoprotei... Lus10042823
[exp]
9.4 0.7982
AT5G03370 acylphosphatase family (.1) Lus10026533
[exp]
10.0 0.8185
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Lus10043207
[exp]
14.5 0.8050
AT1G26920 unknown protein Lus10030488
[exp]
19.9 0.7682
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10005621
[exp]
22.6 0.8007
Lus10017659
[exp]
22.7 0.7596

Lus10040812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.