Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07615 250 / 4e-79 GTP-binding protein Obg/CgtA (.1) AT5G18570 115 / 3e-28 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G30580 59 / 2e-09 GTP binding (.1) AT1G56050 58 / 3e-09 GTP-binding protein-related (.1) AT4G39520 55 / 3e-08 GTP-binding protein-related (.1) AT1G17470 53 / 2e-07 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 53 / 2e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G80770 49 / 2e-06 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G10300 44 / 0.0002 Nucleolar GTP-binding protein (.1) AT5G57960 42 / 0.0005 GTP-binding protein, HflX (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016548 [exp] 478 / 5e-168 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10034166 [exp] 114 / 7e-28 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 114 / 1e-27 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 108 / 6e-26 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10031209 [exp] 60 / 1e-09 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10023261 [exp] 59 / 3e-09 AT1G30580 711 / 0.0 GTP binding (.1) Lus10038543 [exp] 58 / 3e-09 AT1G30580 713 / 0.0 GTP binding (.1) Lus10005800 [exp] 56 / 2e-08 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 56 / 3e-08 AT4G39520 655 / 0.0 GTP-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239600 [exp] 274 / 6e-88 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.010G022400 [exp] 114 / 1e-27 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 108 / 7e-26 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G465900 [exp] 61 / 3e-10 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 60 / 6e-10 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 59 / 3e-09 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.007G080900 [exp] 56 / 2e-08 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 53 / 2e-07 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 53 / 2e-07 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134900 [exp] 50 / 9e-07 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0023 [flax] [poplar] PF01018 [flax] [poplar] GTP1_OBG GTP1/OBG
Representative CDS sequence Show only first row Show all	>Lus10040813 pacid=23157683 polypeptide=Lus10040813 locus=Lus10040813.g ID=Lus10040813.BGIv1.0 annot-version=v1.0 ATGAGGTTGTTGCCCTCTGTGAAATCCCTGTGCCAGTTAGATGCGTTGAGAAAACCCACCAAGTCCCCAAAAGAAAACAAAGGCCGCACCTTTGCAGGTG GTGATGGCGGAGGAGGATGCACCAGTTTTCGAAAGAGCCGACTTGAACGCCGTGGAAGACGCGATGGTGGAAATGGAGGAAGAGGTGGTGATGTAATTTT GGAATGCTCCCATTCAGTCTGGGACTTCAGTGGCCTCCAGCATCATGTTAATGCTGCTAAAGGACGGCATGGAGGTTCAAAAAACATGATTGGAACTCGA GGACACGATAAGGGCGAACTTCCATCTTCAGTTCCGAGCTGCTCTACAAAAGCATTGGATCTATGGGAACTTCCCGGTTCATTAGATACTGATCAGACAG ATTCTCAGCAGACAGACAAAGCTGGAAAAGAAGAATCCCCGGCTCCTGATAGGTGTGGCGTTTCGTCATCTGAAGAAGCTGAATCAAATTCTGAAGAATC ACCAGGAATAGATGTCAACCAAACTAAGTCAGCAGCTGATGGTGAGGAAATACAGTACAACGTTGCGGAATTGACCAAACCGGGCCAGCGAGTCATTGTA GCTCAAGGAGGGGAAGGTGGTTCGGGTAATATGTCTTCTTCATACACTCCAAACATCGCCAAGGCCGCTGCTGCTAAGTCAAATGCTACCGATCTTGATG ATAATGATCATCCCTCAGTCAGAGCTGAGCTCAAGAGTATTGCAGATGTCGGATTAGTGGGTATGCCAAATGCAGGTAAAAGCACACTTCTTCGAGGCTT ATCTCGAGCCAAGCCAACAGTCAGTCACTACGCTTTCACAACCTTGAGACCGAACCTAGGCAAGGTGAAATTCGAAGACTTCTCAATCACGGTGGCTGAT GTCCCCGGACTGATAAAGGGGGCTCACGTGAACTGCGGGCTAGGCCATGCTTTCCTGAGACACATCGAGAGGACGAAGGTGTTGGCTTATGTGGTGGATT TAGCTGATGCGTTGGATAGTAAAAGGAAAGGGCTTCAACCTTGGGAGCAGCTGAGGGACTAG
AA sequence Show only first row Show all	>Lus10040813 pacid=23157683 polypeptide=Lus10040813 locus=Lus10040813.g ID=Lus10040813.BGIv1.0 annot-version=v1.0 MRLLPSVKSLCQLDALRKPTKSPKENKGRTFAGGDGGGGCTSFRKSRLERRGRRDGGNGGRGGDVILECSHSVWDFSGLQHHVNAAKGRHGGSKNMIGTR GHDKGELPSSVPSCSTKALDLWELPGSLDTDQTDSQQTDKAGKEESPAPDRCGVSSSEEAESNSEESPGIDVNQTKSAADGEEIQYNVAELTKPGQRVIV AQGGEGGSGNMSSSYTPNIAKAAAAKSNATDLDDNDHPSVRAELKSIADVGLVGMPNAGKSTLLRGLSRAKPTVSHYAFTTLRPNLGKVKFEDFSITVAD VPGLIKGAHVNCGLGHAFLRHIERTKVLAYVVDLADALDSKRKGLQPWEQLRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	0	1
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	1.0	0.7763
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	9.5	0.6836
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	11.4	0.7531
AT3G22430			unknown protein		Lus10006278 [exp]	14.1	0.7195
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	19.1	0.7199
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	21.5	0.6446
AT1G61670			Lung seven transmembrane recep...		Lus10012872 [exp]	21.6	0.6486
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10032091 [exp]	21.8	0.6791
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	23.9	0.6444
AT4G01880			methyltransferases (.1)		Lus10038053 [exp]	25.4	0.6128

Compare expression of checked genes

Lus10040813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.