Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02390 123 / 4e-29 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G07620 105 / 9e-24 ATOBGM GTP-binding protein Obg/CgtA (.1) AT2G39435 52 / 6e-07 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT2G20240 50 / 6e-06 Protein of unknown function (DUF3741) (.1) AT2G17550 50 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016715 [exp] 122 / 8e-29 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10036009 [exp] 84 / 1e-16 AT5G02390 196 / 9e-53 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10028147 [exp] 56 / 5e-08 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10014776 [exp] 54 / 3e-07 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 54 / 5e-07 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10003295 [exp] 53 / 6e-07 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10030320 [exp] 53 / 6e-07 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10036356 [exp] 51 / 2e-06 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10021148 [exp] 44 / 0.0003 AT1G74160 236 / 9e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030700 [exp] 158 / 2e-40 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 149 / 2e-37 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 145 / 4e-36 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G084600 [exp] 62 / 7e-10 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.010G211700 [exp] 60 / 5e-09 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.002G160000 [exp] 59 / 1e-08 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.005G101700 [exp] 51 / 2e-06 AT2G17550 525 / 2e-174 unknown protein Potri.006G213700 [exp] 49 / 8e-06 AT3G53540 433 / 1e-136 unknown protein Potri.015G058900 [exp] 47 / 4e-05 AT1G74160 795 / 0.0 unknown protein Potri.016G080200 [exp] 45 / 0.0002 AT3G53540 234 / 1e-64 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10040814 pacid=23157796 polypeptide=Lus10040814 locus=Lus10040814.g ID=Lus10040814.BGIv1.0 annot-version=v1.0 ATGGATTTCGGAGACCGTCAGGTTGTAGGGAAGCGGCGATTGTTGTGGGCCATGATGTTTCAGAGGTCTAATTCTCGCAGGAAACACGGCCGAAGAAGAA GGCTTGCCAGATGCTGCGCTTGTCCCAGAACAATTTCGTTCAATGATCACTCTGATGATTTGGAAGCGGCCTCGTTTGATCTCGACTCTGCTGCCCCATT ACTGATTGAAGGGAACCCATCTGCAAGAAAAGCTTCCTTAATCAAAGAACTGATGGCTAAGAAGAAGAAGAAGACTACGTCGTCGTCTGATTGGGGAAAG AATCCGATCATAATCATCCACAAAACTCCCAACAACGCTATGATTCCACCCAAACCTGCAAAAAAACCAACTCAGGAATCGAGTATTAATAAGCAGCTGA GTCGAGCAATTTCAACTCCCCAACAGTTAAAGGACTGCCTTGATGTCCTTGACTTGTTCATGGTCAACAAGAACAATTTCCTGGACATCCTCGACGATGA AGATATTCATGATCATCATCAATCAGTTAGTAGCAGCTTACTCAGCAGGCAGAATTCGACTCGATATATCGGACTGCGAAAGTCAGGATCTTATCCTGCT GTTAACTCCAAGTCACCCAGGTTTCTGAGGCCAAGCGTGCTGGAAGATAAGCACATGGAAGTTTGGTCGTCACCGGCCAAGAGATCGGCTGCAATAACTT CGTTAGTTGTCGCGACGAAGAATAAATCGGGGGATATCGATCGAGTTAGAGCCGGTTCGATTTCTCAGAAAGTGAGGTGCTTTCTGGGCGGGTTTATCAG GAGGAGGATTCTGAACAAGGGTAGAAATAAGAAGAAGAACAGAAGAAGAGTGTCGAATGGGGAAACCGCGAAAAGGACAGATTCGGTTCGTGATGAAATG GTTCGGGTGAGAAGATTGGTTTCGCTGACCGAGTCGTTGAGTAGATACGCTCCGTTGATTGAGCAGAGTTCTTCATCTGTGGCTTGGAGCTACAGAAAGT CAAAGAGCTTGAGGTTGACTTCTGAAAACAAGTCTGATGAGACGAATGGGAATCGTTTGAAGTATAATTCATACCGGAGGAGGCTGTCTATGACCGATCT CGATTCGATTTACCCGGCTAAGGAGCCCCTCAGTAGATTGACTTGGTTGGACCCCGATTTGAAAAAGCCCGACCCTGTGGAGGAGATTGAAGAACCTTCA GGCATTAATCCGAATGCAGGGAGTGAGGAGGAAATGGATTTCGAAATCGAGAATCGAGTTTCCGAAGAAGAACAACTGAATTCTTCTGCAATTCCATCCA GTGTCAATGTTGAAAATGTTCCCATCGAGGAATTGAATTCCTTACAGAAGGAAACAACGAAATTAGATTCGTTTCGGTTTGAATTCGACAGGATTGACTA TGCGGATTTCAATTACGTGAAGGATATTCTCGACCTGTCAGGATTTCTAGACCAAGACTGTGCGGCAACTTCATGGCATTTGTTAGACCAGCCATTAAGT CCCTTGGTGTACAAGGAAATGGAGTCTCTTTTGAAGTATGAAGAGGGTGGAAATGACGAAAATAGGAGCACACATCGTCGGCTTCTATTCGATATGGTGA ACGAGGAGCTACTGGGAATCTTCGAGAGCTCGTTCACTTACTTCCCTAAGCCACTGCTGCAATCAAGTCAGTGTCGGCCAATGCCTAAGGGGAAGAGAGT TCCGGAGCAAGTTTGGAAAAGGATAAGCCAGCGTAGAGTTTCGGATACGGAGGAAGTATCGTTGTACGGTATATTTAGCGGGGAGATGAATAGAGGGGAT GGATGGATGAACATTCAGTTTGATTGTGAGGATGTGGCTCTGGAATTGGAAGATATGATTATGGATCAGCTTGTTGAAGAGATTTTGAGTTAG
AA sequence Show only first row Show all	>Lus10040814 pacid=23157796 polypeptide=Lus10040814 locus=Lus10040814.g ID=Lus10040814.BGIv1.0 annot-version=v1.0 MDFGDRQVVGKRRLLWAMMFQRSNSRRKHGRRRRLARCCACPRTISFNDHSDDLEAASFDLDSAAPLLIEGNPSARKASLIKELMAKKKKKTTSSSDWGK NPIIIIHKTPNNAMIPPKPAKKPTQESSINKQLSRAISTPQQLKDCLDVLDLFMVNKNNFLDILDDEDIHDHHQSVSSSLLSRQNSTRYIGLRKSGSYPA VNSKSPRFLRPSVLEDKHMEVWSSPAKRSAAITSLVVATKNKSGDIDRVRAGSISQKVRCFLGGFIRRRILNKGRNKKKNRRRVSNGETAKRTDSVRDEM VRVRRLVSLTESLSRYAPLIEQSSSSVAWSYRKSKSLRLTSENKSDETNGNRLKYNSYRRRLSMTDLDSIYPAKEPLSRLTWLDPDLKKPDPVEEIEEPS GINPNAGSEEEMDFEIENRVSEEEQLNSSAIPSSVNVENVPIEELNSLQKETTKLDSFRFEFDRIDYADFNYVKDILDLSGFLDQDCAATSWHLLDQPLS PLVYKEMESLLKYEEGGNDENRSTHRRLLFDMVNEELLGIFESSFTYFPKPLLQSSQCRPMPKGKRVPEQVWKRISQRRVSDTEEVSLYGIFSGEMNRGD GWMNIQFDCEDVALELEDMIMDQLVEEILS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	0	1
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	3.2	0.9324
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	5.7	0.9289
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	6.2	0.9436
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	6.7	0.9472
AT4G17900			PLATZ transcription factor fam...		Lus10000482 [exp]	7.7	0.9360
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	8.5	0.9325
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	11.6	0.9301
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	11.9	0.9414
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	12.5	0.9158
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	15.9	0.9302

Compare expression of checked genes

Lus10040814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.