Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71270 1191 / 0 ATVPS52, TTD8, POK T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1) AT1G71300 1115 / 0 Vps52 / Sac2 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016549 [exp] 1372 / 0 AT1G71270 1206 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1) Lus10008551 [exp] 83 / 3e-18 AT5G58100 154 / 8e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G027100 [exp] 1201 / 0 AT1G71270 1189 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04129 [flax] [poplar] Vps52 Vps52 / Sac2 family
Representative CDS sequence Show only first row Show all	>Lus10040815 pacid=23157850 polypeptide=Lus10040815 locus=Lus10040815.g ID=Lus10040815.BGIv1.0 annot-version=v1.0 ATGGCGGACCTCGAAAGACAAAATCTCACCTGGTTCCAGGCCCCAGTCAAGCTTCACCGTCACCTGAGCTTTCCCACCTCTGGGGATGGAACTGATAGTG CGAGAAGCGTGTTTGATTTGGGTGCGTTCGTCGGGGATTTGACGTCTCTGGACGATGATGCCAGCAGTGATGAAATATCACTTGAAGGTCTGGAACAGGA GCTGGAAGAGTGCAAAGGGGATGATGTGGTTGAAAACATATTGTCCAAAGGTACAAAGCTAAGGGAGTACACGAAGGGTGTAGAGAACAACTTGCGGCAG GTTGAACTTGATTCCATCCAGGACTATATAAAAGAAAGTGACAATTTGGTATCTCTCCATGATCAAATTCGTGACTGCGATAGCATCCTGTCGCAGATGG AGACTCTTCTCAGTGGATTTCAGACTGAGATTGGCTCTATTAGTTCGGACATCAAGATTCTCCAGGAGAAGTCTATGGATATGGGTCTGCGGCTGAAAAA CCGGAAGGTTGCTGAATCAAAACTTGCAAGGTTTGTTGAAGACATTATAATTCCACCCAGAATGGTCGATGTGATTGTTGATGGAGAGGTTAATGATGAG TATCTGAGAACTCTAGAGATTCTTAGTAGAAAGCTGAAGTACGTTGAGGATGATCAATTAATTAAAAGTTCAAAAGCTCTCATGGATGTGCAGCCTGAGC TTGATAAGCTTAGGCAGAAAGCAGTATCAAAGGTGTTTGATTTCATTGTTCTGAAGCTTCACGCTCTGAGAAAACCTAAAACAAATATCAAGATCCTTCA ACAAAGTGTTCTTTTAAAGTACAAGTATGTCATTTCCTTTCTAAAAGAACATGGAAGAGAGATATACACTGAAGTCCGCAGTGCATACATTGACACAATG AATAAGGTTCTGAGTGCTCATTTCAAAGCATACATTCAAGCATTGGAAAAATTGCAATTAGATATTGCGACTTCCAGTGATTTAATTGGTGTGGAGACCA GAAGCATGGGTTTATTTTCAATGACTAGGGAGCCACTGAAGAATCGATCAGCTGTTTATGCTTTAGGAGACAGGATTAAAATCTTAAAGGAAATTGAACA ACCAGCATTGATTCCTCATATAGCTGAAGCCAGCTCACAGAAACATCCATATGAGGTCCTCTTTAGGAGCTTACACAAGCTTCTAATGGATACAGCCACA TCGGAGTATCTATTCTGTGATAATTTCTTTGGGGAGCAGTCCATGTTTAATGAAATATTTTCAGGTCCACTTACTGTGATTGATGAACACTTCAATTCAA TACTACCAAACAGCTACGATGCAATCGGCCTAATGCTAATGATTCGAATCATACACCAACACCAGCTAATTATGTCTCGGCGACGAATCCCATGTTTAGA CTCGTATCTCGACAAGGTCAATATTGCATTGTGGCCACGTTTCAAGCTCGTGTTCGACTTGCACCTTAGTAGCATGAGGAACGCTAATATCAGTACACTG TGGGAAGATGATGTCCATCCTCATTATGTCATGAGACGTTATGCAGAATTTACAGCTTCTCTAATTCATCTCAATGTTGAATATGGAGATGGGCAACTTG AATTGAATATGGAAAGGCTCAGAATGGCTGTCGATGACTTGATTATCAAGCTTGCTAGCAAATTCCCTAAACCAAAACAACAGATTGTTTTCCTCATAAA CAACTATGACATGACAATTGCAGTAGTCAAGGAAGCAGGTCCTGAAGGTGGGAAAATTCAAATGCACTTTGAAGAACTGTTGAAGAGCAACACTACATTG TTCGTGGAAGAGCTCCTTCTGGAGCATTTCGGGGATCTAATCAAGTTCGTCAAGATTCGAGCTTCGGAGGACCCAAGTTCCAACCCAGAGAAGCCCATAA GTATTGCGGAAGTCGAACCACTTGTGAAAGACTTTGCAAGCCGATGGAAAGCAGCGATAGAGCTGATGCACAAAGATGTCATCACCTCATTCAGCAACTT CTTGTGTGGTATGGAGATCTTGAGGGCTGCACTAACCCAGCTCCTCCTTTACTACACGAGGTTATCGGACTGCATAAAGAGAATCCCCGGTGGCTCTGCC CTCAACAAAGATCTCATCTCCATATCCTCGATCATGTACGAGATCAGGAAATACTCTAGAACTTTCTAA
AA sequence Show only first row Show all	>Lus10040815 pacid=23157850 polypeptide=Lus10040815 locus=Lus10040815.g ID=Lus10040815.BGIv1.0 annot-version=v1.0 MADLERQNLTWFQAPVKLHRHLSFPTSGDGTDSARSVFDLGAFVGDLTSLDDDASSDEISLEGLEQELEECKGDDVVENILSKGTKLREYTKGVENNLRQ VELDSIQDYIKESDNLVSLHDQIRDCDSILSQMETLLSGFQTEIGSISSDIKILQEKSMDMGLRLKNRKVAESKLARFVEDIIIPPRMVDVIVDGEVNDE YLRTLEILSRKLKYVEDDQLIKSSKALMDVQPELDKLRQKAVSKVFDFIVLKLHALRKPKTNIKILQQSVLLKYKYVISFLKEHGREIYTEVRSAYIDTM NKVLSAHFKAYIQALEKLQLDIATSSDLIGVETRSMGLFSMTREPLKNRSAVYALGDRIKILKEIEQPALIPHIAEASSQKHPYEVLFRSLHKLLMDTAT SEYLFCDNFFGEQSMFNEIFSGPLTVIDEHFNSILPNSYDAIGLMLMIRIIHQHQLIMSRRRIPCLDSYLDKVNIALWPRFKLVFDLHLSSMRNANISTL WEDDVHPHYVMRRYAEFTASLIHLNVEYGDGQLELNMERLRMAVDDLIIKLASKFPKPKQQIVFLINNYDMTIAVVKEAGPEGGKIQMHFEELLKSNTTL FVEELLLEHFGDLIKFVKIRASEDPSSNPEKPISIAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIPGGSA LNKDLISISSIMYEIRKYSRTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	0	1
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	3.2	0.8507
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	4.0	0.8481
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	4.2	0.7759
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	4.9	0.8349
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	5.2	0.8385
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	6.2	0.7891
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	9.2	0.7924
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	11.2	0.8153
AT4G17910			transferases, transferring acy...		Lus10001270 [exp]	12.0	0.7697
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008957 [exp]	17.1	0.7400

Compare expression of checked genes

Lus10040815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.