Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003349 [exp] 603 / 0 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013987 [exp] 532 / 0 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013986 [exp] 518 / 0 ND 55 / 7e-08 Lus10040838 [exp] 494 / 1e-171 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10007302 [exp] 474 / 3e-165 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10016522 [exp] 456 / 3e-154 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10007303 [exp] 357 / 5e-121 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10004929 [exp] 318 / 7e-105 ND / Lus10002769 [exp] 292 / 1e-96 AT1G15680 64 / 2e-11 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 92 / 8e-20 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.009G132400 [exp] 63 / 1e-10 ND / Potri.011G000700 [exp] 56 / 3e-08 AT3G15910 58 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040816 pacid=23157588 polypeptide=Lus10040816 locus=Lus10040816.g ID=Lus10040816.BGIv1.0 annot-version=v1.0 ATGCGCCTCCCCAACCCCACATCCAGCTGTCACTGTAAACTCGTTTGCAAGCGGTGGGACTCCCTGATCTCCAGTCCTACTTTCAACCGTCGTTTCGTTT CTTACCATCAGACCATGAACCACCCACATATGACGCTGGATCCATACGAGCTGAAATCGATCTTCCTGGGCTTTCTCCCTCCCATGCCCTGTAGAGTTGG AAACGCTCTCAGAGTTTTGGTTTTATGCGGCTTTTGGGACGCAGATTGTGACGAGGGGGAACGTGGGAGAACGTACTTGGTCTGCAATCCATTTACCAAG CAGTGGATGGCACTTCCTTTAGCGCCTAGGAAGCATGCGGGTTATATATTTCGGGTCGGAAGGTTAGTTTGTGAACCCCGGAATTTTAATAAGCTTGATC TAGGAGATGACCAAGCATTTGTTTATTCTGAGTATCGCTTCCGTGTGCTAGACGTGTTTTGTTCCGATTCTGGAGAATGGACCAAGGAAGCTTTTTTCTC TGATAGACTTCATGTTAAAACTGGAATAAAAGGTGTAATTTCGTGCAATGGGGAGTTGTTTTGGAAGTATTCTAATCGGGGTGCCCGGGTTGGACCTTCG GTGGCTGTGTTTAACCCTTTCCGCCTTGATACGCGTCCCACTTCCATTGATTGTTCTGCATTCCATGTGTACCCGCATTGGTTTATTTCCGGCTCACAAG GGGTGTTGCACGCAATTGCAATAGAAAATCTAACTGCACCTCTCCGTGTAAGCATCTGGAGACTCGAACAAGACGGTAAATTTTGGAGGAAACAATATGA GGGTTTGGTGAACGAGACTTCCAAGTGTGAGAAGAGTCGTTTTAGGAGTGATCCTGGGAAATCGTCTTCTTCAATCCGCTTTACTCTGAAGAAACGAATG AATGCTATATTGTGCTGCGACTTGACAACACAAGAGCTAGACTTCTTCGCTAAAGTAGAAGGGAAGCCTGATGTCTATCAGCTTCAGGTGTTCCAGCCAA CGGTTTCTTGCTGGGCTACTCCAATTTCAAGCAAATTTATGAAATCAACCTTTTACAAGGACTATATGCAAAACGTGACAGAAGAGGCAACTCTGGACAT GGTGGCCGAAATCATTCGGCGGAGGAGGAAGAAGAAAATGAGCGAAATTGTTTTAAGAGAAAGGCAGCTGCCTCGTTTCCCATTTGACAAGGAATTGGAT GAACTAGAAACTGTTTCTAGACATGTTGAAGCTGACATGGTCACTATTGGCAAAAAGAATTGGAAAAGTGATGCGGCAGAGCTTCTTTATCCTCCAGGTA AGACGGGCGGAACTATGAAGGACTACGGAAAAGATATTCTTGCTATTTTGACGAGGGTATTATGCCTAATTGCAGTTGCTGGCGCAGAAGCCCAAGCGCT GCCGATGAACTAA
AA sequence Show only first row Show all	>Lus10040816 pacid=23157588 polypeptide=Lus10040816 locus=Lus10040816.g ID=Lus10040816.BGIv1.0 annot-version=v1.0 MRLPNPTSSCHCKLVCKRWDSLISSPTFNRRFVSYHQTMNHPHMTLDPYELKSIFLGFLPPMPCRVGNALRVLVLCGFWDADCDEGERGRTYLVCNPFTK QWMALPLAPRKHAGYIFRVGRLVCEPRNFNKLDLGDDQAFVYSEYRFRVLDVFCSDSGEWTKEAFFSDRLHVKTGIKGVISCNGELFWKYSNRGARVGPS VAVFNPFRLDTRPTSIDCSAFHVYPHWFISGSQGVLHAIAIENLTAPLRVSIWRLEQDGKFWRKQYEGLVNETSKCEKSRFRSDPGKSSSSIRFTLKKRM NAILCCDLTTQELDFFAKVEGKPDVYQLQVFQPTVSCWATPISSKFMKSTFYKDYMQNVTEEATLDMVAEIIRRRRKKKMSEIVLRERQLPRFPFDKELD ELETVSRHVEADMVTIGKKNWKSDAAELLYPPGKTGGTMKDYGKDILAILTRVLCLIAVAGAEAQALPMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040816 [exp]	0	1
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	2.0	0.8681
AT4G12010			Disease resistance protein (TI...		Lus10023051 [exp]	3.5	0.8422
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	3.9	0.8389
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	5.3	0.8351
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	8.5	0.8498
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	9.2	0.8364
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	9.9	0.8192
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	11.4	0.8197
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	20.0	0.7772
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	20.0	0.8125

Compare expression of checked genes

Lus10040816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.