Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 225 / 8e-70 Mitochondrial transcription termination factor family protein (.1) AT1G21150 189 / 2e-56 Mitochondrial transcription termination factor family protein (.1) AT1G61980 129 / 2e-33 Mitochondrial transcription termination factor family protein (.1) AT5G64950 126 / 1e-32 Mitochondrial transcription termination factor family protein (.1) AT1G61970 126 / 2e-32 Mitochondrial transcription termination factor family protein (.1.2) AT3G46950 122 / 9e-31 Mitochondrial transcription termination factor family protein (.1) AT5G23930 113 / 1e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61960 113 / 1e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61990 111 / 4e-27 Mitochondrial transcription termination factor family protein (.1) AT1G62085 110 / 1e-26 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016550 [exp] 600 / 0 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 450 / 3e-158 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 388 / 1e-133 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 303 / 6e-102 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 278 / 5e-92 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 266 / 9e-88 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 252 / 4e-82 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 209 / 1e-63 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040462 [exp] 173 / 1e-52 AT5G07900 93 / 1e-22 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046700 [exp] 252 / 1e-80 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 244 / 3e-77 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 238 / 5e-75 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 232 / 5e-73 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 232 / 1e-72 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 231 / 2e-72 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 222 / 6e-69 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 221 / 2e-68 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.012G046800 [exp] 220 / 3e-68 AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 218 / 2e-67 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10040817 pacid=23157790 polypeptide=Lus10040817 locus=Lus10040817.g ID=Lus10040817.BGIv1.0 annot-version=v1.0 ATGATTCACCGAGTGCGGTTTTTTCTGAAGAATTGTCTCCTTCATAGCGATAGATCATTGCAGTCTGTACGGCGGTTTTCGACCGAGGACTCCGTCAACT CTTTTGCTCTGTCTTATCTGATCAACGAATGTGGTCTCCGTCCAGAAAAGGCCGCAGCTTGCGTTAAGTACGCCCGTTTCAAAACTCCCGATACACCAAA TGTAGTCCTGCAGTTCTTGAGGAGCCTCGGTTTCTCCAGTTCTCAGATTCCTATAATCATCGGGAGGCGTCCCAGCCTGCTGCATTCCGATCCTCGGAAA CTTTTCATGGCCAAGATTGATTTCCTGGAATCCCACGGGTTTTCCCCCTCCGACATTGCTCAAGTACTCTTAAGAGCTCCGGAGATACTGCACTGCAAAG TTGAAGAACAACTCCTTCCGAATCTCAACTTCGTTAAAAGCGTCCTTAAGTCCGAGGAGAAGGTGATTCGTGCTGTCAGGCGTAGTCCTTTCCTGTTGAC TTGCAATCCGGAGTCGTATTTGATTCCAAGTATCAAGATTTTAAAGGAATCCGGGGTGGGCAATTCAAACATTATCCGGTTGCTCGAGTTTCACCCTATG ACTATGATGACGTCGCAAAGTCTCCTCTCTAAGGTTGTTGAGCGTGTGAAGGAAATGGGAATGGATCCTAAGTTGGTGACGTTCGGGCGTGCTGTTCAGA CGATCAGAGGGCTGTCGAAAGGGTCGTGGGAGAGTAAGGTTGATGCTTATAAGAAATGGGGTTGGTCTGAGGAAGTGATTCTCAAAGCTTTTACCAAGTC TCCTGGGTGTATGGCGGCGTCTGTGAAGAAAATTATGGAGAATATGGACTATTATGTTAATGGAATGGGGTTTGATGCTCTGTATATTGCAGAGCGGCCT TTGTTAGTGTCGTTCAGCTTGAAGAAGAGGATTGTGCCCCGCGGTAGTGTACTACGTGCCTTGCTTGATAAAGATTTGATTGAGTCGATAAATTTGAATC GGTCTTTGAAGATGAGTAACGAGTTGTTTGAACAGAGGTTTTTGGTGCCTTACAAGGAGGAGGCTCCTCAACTGTTGGAGCTGTTTCGTGCACAAATATC GGAGCAAGCTGAAGAGTCAAAGCTTCATGGAGAACATGGGGTTTATCATGTGGATTAA
AA sequence Show only first row Show all	>Lus10040817 pacid=23157790 polypeptide=Lus10040817 locus=Lus10040817.g ID=Lus10040817.BGIv1.0 annot-version=v1.0 MIHRVRFFLKNCLLHSDRSLQSVRRFSTEDSVNSFALSYLINECGLRPEKAAACVKYARFKTPDTPNVVLQFLRSLGFSSSQIPIIIGRRPSLLHSDPRK LFMAKIDFLESHGFSPSDIAQVLLRAPEILHCKVEEQLLPNLNFVKSVLKSEEKVIRAVRRSPFLLTCNPESYLIPSIKILKESGVGNSNIIRLLEFHPM TMMTSQSLLSKVVERVKEMGMDPKLVTFGRAVQTIRGLSKGSWESKVDAYKKWGWSEEVILKAFTKSPGCMAASVKKIMENMDYYVNGMGFDALYIAERP LLVSFSLKKRIVPRGSVLRALLDKDLIESINLNRSLKMSNELFEQRFLVPYKEEAPQLLELFRAQISEQAEESKLHGEHGVYHVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	0	1
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	1.0	0.9008
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	4.6	0.8885
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	6.5	0.9004
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	6.5	0.8897
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	8.0	0.8986
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	9.2	0.8915
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	9.5	0.9005
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10019430 [exp]	10.5	0.8514
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	14.4	0.8876
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	14.5	0.8467

Compare expression of checked genes

Lus10040817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.