Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) AT1G21150 111 / 5e-28 Mitochondrial transcription termination factor family protein (.1) AT1G61970 96 / 4e-22 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 90 / 4e-20 Mitochondrial transcription termination factor family protein (.1) AT1G62110 90 / 5e-20 Mitochondrial transcription termination factor family protein (.1) AT1G61960 89 / 1e-19 Mitochondrial transcription termination factor family protein (.1) AT3G46950 81 / 3e-17 Mitochondrial transcription termination factor family protein (.1) AT1G62120 81 / 6e-17 Mitochondrial transcription termination factor family protein (.1) AT5G23930 78 / 6e-16 Mitochondrial transcription termination factor family protein (.1) AT1G62085 77 / 7e-16 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016551 [exp] 485 / 2e-175 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040462 [exp] 283 / 4e-97 AT5G07900 93 / 1e-22 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 278 / 4e-92 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 269 / 1e-88 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 255 / 4e-83 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 228 / 7e-74 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 221 / 7e-70 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 155 / 2e-44 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 105 / 9e-27 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022700 [exp] 143 / 4e-40 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 141 / 4e-39 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 140 / 6e-39 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.008G216200 [exp] 140 / 9e-39 AT5G07900 217 / 8e-67 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 139 / 3e-38 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 135 / 1e-36 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 131 / 2e-35 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 130 / 3e-35 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.012G046800 [exp] 129 / 1e-34 AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 127 / 7e-34 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10040818 pacid=23157689 polypeptide=Lus10040818 locus=Lus10040818.g ID=Lus10040818.BGIv1.0 annot-version=v1.0 ATGGCGGCTCCCAAAGCAACAGCTTACCTCACTCCGATCAAGCAAAATACTCCTTCATCGTCGCCTGAGCTTTTTGAAGCCTTGAAGAATCGGCACCTCC ATAGCGATAGATTACTACGTTTCCAAGTTCGAAACCATCCGCGACAGTTCTCGAACGAATCCGACGGCAATCAAACCACCACCTTCGGCCCGATTGTTTT ATCTTACCTCATCAATGAATGCGGAATCCGTCCCGAAAAGGCAGCATCCGCCGTCAAATACGCCCAATTCAAAACCCCAGAAAAGGCCAATTCGGTCTTG CATTTCTTCACAACCCTCGGCTTCTCAGCCGCCGACATCTCCAAAATCATCGGGGGGCGTCCTCGTCTGCTACTTTCCGATCCGGACAAACAATTCGCTC CCCGGATTAGTTTCCTGGAATCGCAAGGGTTTTCTCCCTCCGACAGTGCTCAAGTCTTACTGAGAGGTCCTGAGATATTCTATTCCAGCGTAGCCAAACA GCTGCTACCCAATTTTGAATTCATCAAGAGCGTCGTCCTTTCCAACGAGAAGGCTGTTCAAGCCATTAGGCGAAGTCCTTTGTTTTTGACTTGTAAGCTG GAGACGTATTTGATCACGAGCATCAAGACTCTGAAGGAAAACGGGATTAGCGACTCGTTTATTGTACGGTTGCTTGTCTCTAGCCCCTTATTAACTATGT TGACACCGCAGGCTAAATTATCCGAGGCTGTTGAGCGTGTGAAGGAAAATGGGATTGATCCTAACTCGGCAACGTTTGCTGTTGCTATGGAGACGATCAA AGCGACTAAAGTGACGTGGGATGGTAAGGTTGATGCTTATAAGAAGTGGGGGGGTGGTCTGATGAAGTGA
AA sequence Show only first row Show all	>Lus10040818 pacid=23157689 polypeptide=Lus10040818 locus=Lus10040818.g ID=Lus10040818.BGIv1.0 annot-version=v1.0 MAAPKATAYLTPIKQNTPSSSPELFEALKNRHLHSDRLLRFQVRNHPRQFSNESDGNQTTTFGPIVLSYLINECGIRPEKAASAVKYAQFKTPEKANSVL HFFTTLGFSAADISKIIGGRPRLLLSDPDKQFAPRISFLESQGFSPSDSAQVLLRGPEIFYSSVAKQLLPNFEFIKSVVLSNEKAVQAIRRSPLFLTCKL ETYLITSIKTLKENGISDSFIVRLLVSSPLLTMLTPQAKLSEAVERVKENGIDPNSATFAVAMETIKATKVTWDGKVDAYKKWGGGLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10040818 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	247.8	0.6962

Compare expression of checked genes

Lus10040818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.