Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) AT1G21150 111 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT3G46950 108 / 6e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61970 98 / 3e-23 Mitochondrial transcription termination factor family protein (.1.2) AT1G61960 98 / 5e-23 Mitochondrial transcription termination factor family protein (.1) AT1G61980 94 / 9e-22 Mitochondrial transcription termination factor family protein (.1) AT1G62110 94 / 2e-21 Mitochondrial transcription termination factor family protein (.1) AT1G62120 92 / 5e-21 Mitochondrial transcription termination factor family protein (.1) AT1G62085 91 / 2e-20 Mitochondrial transcription termination factor family protein (.1) AT1G61990 88 / 9e-20 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040820 [exp] 517 / 0 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 258 / 7e-85 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 250 / 5e-83 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 252 / 4e-82 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 241 / 3e-78 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 232 / 4e-76 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 228 / 7e-74 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10040462 [exp] 142 / 3e-42 AT5G07900 93 / 1e-22 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 140 / 4e-39 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038500 [exp] 162 / 3e-47 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 160 / 2e-46 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 159 / 2e-46 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 158 / 7e-46 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 157 / 1e-45 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 152 / 2e-43 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 151 / 2e-43 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 150 / 4e-43 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 150 / 5e-43 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 141 / 3e-39 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10040819 pacid=23157642 polypeptide=Lus10040819 locus=Lus10040819.g ID=Lus10040819.BGIv1.0 annot-version=v1.0 ATGAACCATCCACTTAGATTCCTTCTCGAGAATCGCGGTGTTCATCGGTCACTACTTCCCTACGCTCTCCGGCGATTCTCCAGCGAATCAAGCGCTCCAA ACATCGCCGCGTCGTACCTCACAAGCGAGTGCGGATTCCGTCCGGAAACCGCCCTCTCCGCCTCCAGGTACGTCACCTTCAAAACTCGAGAAAGAGCCGA CTCAGTCCTGCGATTCTTCAAAGAAATCGGATTCGCCGATTCCCAAATCCCGAAACTAATCGGGAGGCGTCCGCGGCTGCTAGTGTGCGACCCGGAGAAG CATTTCGTGCCCAGGATTAAATTCCTGGAATCCAAAGGCTTCACAACTCAAAACATTTTGAAAATGTTGCGTAAATGCCCCGAGATTTTCAACGCCAGCG TAGAGAACCAGCTGCTCTCTAATTTCAAATACGTTAGAGATGTGATTCAGTGCGAGAACAAAGTCCTTCGTGCCATAACCCGCACCCCGGGTCTGCTAAC TTGGAAGCTGGAGTCCTGTTTGGTGCCCAACATCAAGATTCTTCGAGAATCCGGCTCGTCTGAATCCAACGTCGTCATGCTGATGCTGTACCAGCCTATG GTTCTGCTAACTACACAAGATAATTTCTCGCGGGTTGTCGAACGAGTAAAGCAAATGGGGGTGCCTCCCCAGTCGACGACTTTCGGCATAGCGATCCAGG CAGTGAGAGGAATGAGCGACGAGTTATGGAGAAATAAGGTTGAAGCTTACAAGAAATGGAGTAAGGTTGATGCTTATAAGAAGTGGGGGGGTGGTCTGAT GAAGTGA
AA sequence Show only first row Show all	>Lus10040819 pacid=23157642 polypeptide=Lus10040819 locus=Lus10040819.g ID=Lus10040819.BGIv1.0 annot-version=v1.0 MNHPLRFLLENRGVHRSLLPYALRRFSSESSAPNIAASYLTSECGFRPETALSASRYVTFKTRERADSVLRFFKEIGFADSQIPKLIGRRPRLLVCDPEK HFVPRIKFLESKGFTTQNILKMLRKCPEIFNASVENQLLSNFKYVRDVIQCENKVLRAITRTPGLLTWKLESCLVPNIKILRESGSSESNVVMLMLYQPM VLLTTQDNFSRVVERVKQMGVPPQSTTFGIAIQAVRGMSDELWRNKVEAYKKWSKVDAYKKWGGGLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10040819 [exp]	0	1
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	4.0	0.8719
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	4.2	0.8492
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	4.8	0.8894
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	5.2	0.8707
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	6.9	0.8518
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	9.4	0.8654
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	10.2	0.8589
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	13.2	0.8546
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	19.0	0.8186
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	19.2	0.8309

Compare expression of checked genes

Lus10040819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.