Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) AT1G21150 192 / 2e-57 Mitochondrial transcription termination factor family protein (.1) AT3G46950 143 / 2e-38 Mitochondrial transcription termination factor family protein (.1) AT1G61980 137 / 2e-36 Mitochondrial transcription termination factor family protein (.1) AT1G61970 132 / 2e-34 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 127 / 5e-33 Mitochondrial transcription termination factor family protein (.1) AT1G62120 127 / 1e-32 Mitochondrial transcription termination factor family protein (.1) AT5G64950 125 / 4e-32 Mitochondrial transcription termination factor family protein (.1) AT1G61960 119 / 8e-30 Mitochondrial transcription termination factor family protein (.1) AT1G62085 119 / 1e-29 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040819 [exp] 518 / 0 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 444 / 5e-158 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 394 / 3e-136 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 388 / 6e-134 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 388 / 9e-134 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 242 / 5e-78 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 221 / 8e-70 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 197 / 4e-59 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 180 / 5e-53 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013100 [exp] 248 / 5e-79 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 237 / 1e-74 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 237 / 1e-74 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 234 / 6e-74 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 235 / 7e-74 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 233 / 4e-73 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 233 / 4e-73 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 232 / 7e-73 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 231 / 1e-72 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 219 / 7e-68 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10040820 pacid=23157586 polypeptide=Lus10040820 locus=Lus10040820.g ID=Lus10040820.BGIv1.0 annot-version=v1.0 ATGAACCATCCACTTAGATTCCTTCTCGAGAATCGCGGTGTTCATCGGTCACTACTTCCCTACGCTCTCCGGCGATTCTCCAGCGAATCAAGCGCTCCGA ACATCGACGCGTCGTACCTCACAAGCGAGTGCGGATGCCGTCCGGAAACCGCCCTCTCCGCCTCCAGGTACGTCACCTTCAAAACTCGAGAAAGAGCCGA CTCAGTCCTGCGATTCTTCAAAGAAATCGGATTCGCCGATTCCCAAATCCCGAAACTAATCGGGAGGCGTCCGCGGCTGCTAGTGTGCGACCCGGAGAAG CATTTCGTGCCCAGGATTAAATTCCTGGAATCCAAAGGCTTCACAACTCAAAACATTTTGAAAATGTTGCGTAAATGCCCCGAGATTTTCAACGCCAGCG TAGAGAACCAGCTGCTCTCTAATTTCAAATACGTTAGAGATGTGATTCAGTGCGAGAACAAAGTCCTTCGTGCCATAACCCGCACCCCGGGTCTGCTAAC TTGGAAGCTGGAGTCCTGTTTGGTGCCCAACATCAAGATTCTTCGAGAATCCGGCTCGTCTGAATCCAACGTCGTCATGCTGATGCTGTACCAGCCTATG GTTCTGCTAACTACACAAGATAATTTCTCGCGGGTTGTCGAACGAGTAAAGCAAATGGGGGTGCCTCCCCAGTCGACGACTTTCGGCATAGCGATCCAGG CAGTGAGAGGAATGAGCGACGAGTTATGGAGAAATAAGGTTGAAGCTTACAAGAAATGGGGTTGGTCTGAGGAAGTGACTCTGAAAGCGTTCACAAAGTG TCCCTGGTGTATGGCATTGTCTGAGAAGAAGATCATGGAGAACATGGACTATTATGTTAACCAAATGGGATTCGAGACTTTAGATATTGCGAATCGACCT ACTGTGCTTTCGTTCAGCTTGAAGAAGAGGATCGTGCCGCGGGATTCTGTTCTCCAGGTATTGGTATCGAAAGGGCTGATCGAGTCTCGAGCTATATCGA ACGCGCTGGTGATTGATGATGAGAAATTCAGAAGCAAGTTTGTGGCGCCTTATGAGGTCGAAGCTCCTGAACTTTCCGAGCATTTCTGCAAAATGCTGGC CCAAGCTGACGAGCAGGATTCCAGAGATGGGATAGAAACAAGCACAAGAAGTTGCGGTCTCGTGTAA
AA sequence Show only first row Show all	>Lus10040820 pacid=23157586 polypeptide=Lus10040820 locus=Lus10040820.g ID=Lus10040820.BGIv1.0 annot-version=v1.0 MNHPLRFLLENRGVHRSLLPYALRRFSSESSAPNIDASYLTSECGCRPETALSASRYVTFKTRERADSVLRFFKEIGFADSQIPKLIGRRPRLLVCDPEK HFVPRIKFLESKGFTTQNILKMLRKCPEIFNASVENQLLSNFKYVRDVIQCENKVLRAITRTPGLLTWKLESCLVPNIKILRESGSSESNVVMLMLYQPM VLLTTQDNFSRVVERVKQMGVPPQSTTFGIAIQAVRGMSDELWRNKVEAYKKWGWSEEVTLKAFTKCPWCMALSEKKIMENMDYYVNQMGFETLDIANRP TVLSFSLKKRIVPRDSVLQVLVSKGLIESRAISNALVIDDEKFRSKFVAPYEVEAPELSEHFCKMLAQADEQDSRDGIETSTRSCGLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10040820 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	3.7	0.8808
AT3G21400			unknown protein		Lus10006520 [exp]	8.0	0.8473
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	8.4	0.8719
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	8.9	0.8610
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	11.6	0.8663
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	14.7	0.8484
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	16.1	0.8541
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	18.2	0.8445
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	19.4	0.8385
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10016554 [exp]	19.9	0.8462

Compare expression of checked genes

Lus10040820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.