Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07630 805 / 0 PLL5 pol-like 5 (.1) AT2G28890 800 / 0 PLL4 poltergeist like 4 (.1) AT5G02400 578 / 0 PLL2 pol-like 2 (.1) AT3G09400 540 / 0 PLL3 pol-like 3 (.1.2) AT2G46920 341 / 5e-105 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 333 / 1e-102 PLL1 poltergeist like 1 (.1) AT3G16560 219 / 5e-63 Protein phosphatase 2C family protein (.1) AT3G12620 147 / 2e-38 Protein phosphatase 2C family protein (.1.2) AT3G55050 144 / 2e-37 Protein phosphatase 2C family protein (.1.2) AT3G51370 140 / 8e-37 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016555 [exp] 1333 / 0 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 417 / 8e-137 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 416 / 2e-136 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10004554 [exp] 348 / 8e-108 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10000896 [exp] 344 / 2e-107 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10008378 [exp] 214 / 4e-61 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10004793 [exp] 214 / 5e-61 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10015047 [exp] 149 / 4e-39 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 143 / 5e-37 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239300 [exp] 959 / 0 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.009G030600 [exp] 957 / 0 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.006G085000 [exp] 624 / 0 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.001G144700 [exp] 350 / 4e-109 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.003G089500 [exp] 349 / 5e-109 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 352 / 1e-108 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 347 / 7e-107 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G159600 [exp] 259 / 1e-77 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 212 / 4e-60 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 211 / 5e-60 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10040823 pacid=23157597 polypeptide=Lus10040823 locus=Lus10040823.g ID=Lus10040823.BGIv1.0 annot-version=v1.0 ATGGGAAACGGAATCGGTAAGCTTACCGTCTGTTTCACCGGCGGTGGGGGCGGAGATGTCCGCCGCCGGCACGACCTGTCTCTCCTGATATCAGACCCTC TGGATGAAGGACTCGGGCACTCGTTCTGCTACGTCCGACCCGATCCGGCCCGACTGTCCTCCTCCAAGGTCCACCACAATAACAACAGCAACTCCGCCGC CGAGCAGGAATCCACCACTTTCCGTACAATCTCTGGCGCATCAATAAGTGCCAACACCTCCACCCCTCTCTCCACGGCGTTCGTCGACCCTTACGTCTAC AACACCATCGATCGCGCCGCCGCCTTCGAGAGCTCCACTTCTTTCGCCTCCATCCCTCTCCAGCCGATTCCCAGAAACTTAATCGGCGGCGGCGGAGGTT CCAATTCAGTCTATTCAGGACCCCTCCCGGGTCAGTACCCGGGTCTAATCATACCCGGTTCAGGCCCGATGGAGCGCGGGTTCATGTCCGGTCCAATCGA GAGGGGATTCTTGTCGGGTCCGCTGGATAACCGGTCGGGTCTCTTCTCCGGTCCGATGGAAAAATCCGGTTCGGATCCCGACCGACTCCACCGTAGCTTC TCCTACGGCGGAGGATTCGCCTTCAAATCCAGATCCAGAAAACGTTCACTTATCAGAGTTCTTCAGCGGGCGATATCGAAGACCCGAGCATACTCCCGGC GCGGGCAGAACTCGATGGTCGCCCCGATTAAAAACGGAGCCCTGATCAAACAACATTCACAACCCGACTGGATCCTCAGCAGCTCCGAAAAACAGAACGA AAACTTGACAGTAAGCAGCAGCGGCGACGGTAGTTTGGGAGATGAAGACGACGGTTCGTTGCAGCAGCAGAATCTACAGTGGGCGCAAGGGAAAGCAGGG GAGGATCGCGTACACGTCGTCGTTTCGGACGAGCACGGATGGGTCTTCGTCGGGATCTACGACGGTTTCAACGGTCCAGATGCGCCGGATTTTCTAGTCT CCAATCTCTACTCCGCCGTCTACAAGGAGCTCAAAGGTTTGTTATGGGACGATGACAAAGATAATCAAAGTTGCGATTCCCCTGTTTCGTTAGATGATAG TAGTGTTTCGATTGAGCTGCGAGAGGAGGAAAGATTCGCCTGTATAAATGTTGATGATGATGATGATCATCCATGCGTGAGTAAAGATGAGAGCTTTGCT AAGAGGAGACGTGGTGGCAAGAATTCGAAATCGAGATATCGAGGGGTTTCGAAGAAATGGGAGGAGAATCAGAGGAGGTGGAAGAGCGAGTGGGATAAGG AAAGGTTAGAGCTTGACAGAAGGTTGAAGGAGCAGCTGACGAACCAATCGAAATCCGGTTCGGGTAATGCGATCAATCACGGAGATGTGTTGAAAGCTCT GTCACAGGCGTTGAGGAAGACCGAGGAATCGTATCTAGGCATCACGGATATGATGCTTATGGAGAATCCAGAGCTGGCTCTGATGGGTTCATGCGTGCTT GTGATGTTGATGAAGGGAGAAGATGTTTATGTGTTGAATGTAGGTGATAGCCGAGCTGTGTTGGCTCAGAAGGCCGAGCCTGATTATGGTCTGGGACGGG CTAGGCAGGATTTGGAGAGGATCAATGAGGAGACTTTGCACGATCTAGATTCCGACGAGGAGGAAGAAAGGTCGAATGCGTTGACGAATTTGGCTGCTGT TCAGCTTACCATTGATCATAGTACCAGCGCAGAAGAGGAAGTTCAAAGAATAAGAAGTGAGCATCCAGATGATCCTTGTGCTGTGGTGAATGACCGTGTG AAAGGTTCGCTCAAGGTTACTCGAGCTTTCGGTGCTGGTTTTCTGAAACAGGCGAAATGGAACGATGCGCTACTCGAGATGTTCCGAATCGACTACATTG GCAATTCCCCATACATAAACTGTGTACCATCACTCTACCACCATAGATTAGGAGCAAAGGACAGGTTTTTGATACTATGCTCGGACGGACTCTATCAGTA CTTAACCAACGAGGAGGCAGTTTCCGAAGTCGAGCTTTTCATCGCCTTGCAACCAGAAGGCGATCCAGCACAGCATCTAGTCGAGGAAGTTATGTTCCGT GCAGCTAAGAAAGCCGGTATGGACTTCCACGAATTGCTGGAGATCCCACAAGGCGACCGGAGGCGATACCATGACGACGTCTCCATCATCGTGATCTCTT TGGAGGGAAGGATATGGAGATCTTTTGTGTAG
AA sequence Show only first row Show all	>Lus10040823 pacid=23157597 polypeptide=Lus10040823 locus=Lus10040823.g ID=Lus10040823.BGIv1.0 annot-version=v1.0 MGNGIGKLTVCFTGGGGGDVRRRHDLSLLISDPLDEGLGHSFCYVRPDPARLSSSKVHHNNNSNSAAEQESTTFRTISGASISANTSTPLSTAFVDPYVY NTIDRAAAFESSTSFASIPLQPIPRNLIGGGGGSNSVYSGPLPGQYPGLIIPGSGPMERGFMSGPIERGFLSGPLDNRSGLFSGPMEKSGSDPDRLHRSF SYGGGFAFKSRSRKRSLIRVLQRAISKTRAYSRRGQNSMVAPIKNGALIKQHSQPDWILSSSEKQNENLTVSSSGDGSLGDEDDGSLQQQNLQWAQGKAG EDRVHVVVSDEHGWVFVGIYDGFNGPDAPDFLVSNLYSAVYKELKGLLWDDDKDNQSCDSPVSLDDSSVSIELREEERFACINVDDDDDHPCVSKDESFA KRRRGGKNSKSRYRGVSKKWEENQRRWKSEWDKERLELDRRLKEQLTNQSKSGSGNAINHGDVLKALSQALRKTEESYLGITDMMLMENPELALMGSCVL VMLMKGEDVYVLNVGDSRAVLAQKAEPDYGLGRARQDLERINEETLHDLDSDEEEERSNALTNLAAVQLTIDHSTSAEEEVQRIRSEHPDDPCAVVNDRV KGSLKVTRAFGAGFLKQAKWNDALLEMFRIDYIGNSPYINCVPSLYHHRLGAKDRFLILCSDGLYQYLTNEEAVSEVELFIALQPEGDPAQHLVEEVMFR AAKKAGMDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	1.0	0.9404
AT1G76600			unknown protein		Lus10012442 [exp]	3.2	0.8618
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	3.5	0.8473
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	4.0	0.8374
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	5.3	0.8216
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	6.5	0.7981
AT2G15220			Plant basic secretory protein ...		Lus10001360 [exp]	6.7	0.8138
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	7.3	0.8219
AT2G19130			S-locus lectin protein kinase ...		Lus10039732 [exp]	7.7	0.8116
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	8.0	0.7872

Compare expression of checked genes

Lus10040823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.