Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 265 / 6e-88 ENTH/VHS family protein (.1) AT1G08670 153 / 3e-45 ENTH/VHS family protein (.1) AT3G23350 152 / 5e-44 ENTH/VHS family protein (.1) AT2G43160 68 / 2e-12 ENTH/VHS family protein (.1.2.3.4) AT3G59290 63 / 1e-10 ENTH/VHS family protein (.1) AT5G11710 62 / 2e-10 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016556 [exp] 512 / 0 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 215 / 8e-69 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10005164 [exp] 179 / 1e-51 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10021173 [exp] 173 / 4e-51 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 172 / 1e-50 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10023415 [exp] 132 / 2e-37 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10026741 [exp] 69 / 1e-12 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10025527 [exp] 67 / 4e-12 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10007460 [exp] 63 / 1e-10 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030500 [exp] 314 / 1e-106 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 284 / 4e-95 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 218 / 1e-69 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 120 / 1e-32 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 74 / 2e-14 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.014G151300 [exp] 69 / 7e-13 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 61 / 4e-10 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10040824 pacid=23157572 polypeptide=Lus10040824 locus=Lus10040824.g ID=Lus10040824.BGIv1.0 annot-version=v1.0 ATGTCTGCCGGCGCGGCTGGCGGTGGCTCTGCCACTTCCTTCCTGGAATTCAAAAAGCAAGCATCTTTCTTCTTCAAAGAGAAGATCAAGACTGCCCGTT TGGCTCTCACCGACGTTACTCCTGCCCAACTGTTGACTGAGGAAGCAACTAGTGGGAATCCATGGGCTCCAGACACTCGTACTCTTGGATCCATATCAAG GGCTGCTTTCGAACTTGATGATTACCTCAGAATCGTTGAGATTCTTCACAAAAGATTGGTCAAATTTGAAAGAAAGAACTGGAGAGCAACTTACCATTCC TTAATGTTGCTGGAGCGTTTGCTTACTCATGGTCCGGAAAGTGTAGCCAAAGAGTTCCATGAAGATAGAGACGCCATTAGAGAAGCTCAGACTTTTCAGC ACATTGATGAGAAAGGGTTCAATTGGGGGTTAGCTGTAAGGAAGAAATCAGAGAGGATTCTGAAGCTGCTGGAGAACGAGGGGTTGCTCAAGGAAGAGAG GGATAGATCACGAAAGCTAACCAGAGGGATCCAAGGCTTTGGTAGCTTCTCCGAGAAAACTTCATCTTCAAAACTCGGCATTTTGCAGCAATCATATGGA CGGAGCAATTCGCAGTCTAATGATGATTCCGAGGAGAACAAGATTGTGTCTGATGAGAAAGAGAATTTGTTCCAGAAAGTGGAGAGTTCTATGAACAAAT ATGGAATCTTTTCTGTGGATTCTGTGAACAGAAACCGACGGCTCGAGAAAATCGAAACAAGGTTGAAGGAAAACATGGCTCCTGATGACGAGGAAGAACA GGTGAATCTGCTTCTCGGAGAGGATCAAGTAGCAGTACTTGCTGCAGAAGAGGATCATCATCCATTCACTAATACTGAGCATCAAACAGTTGCTTCTTCA CTCTTGTCAGCTAATGATGGTATCATCCTGCAAGGATGA
AA sequence Show only first row Show all	>Lus10040824 pacid=23157572 polypeptide=Lus10040824 locus=Lus10040824.g ID=Lus10040824.BGIv1.0 annot-version=v1.0 MSAGAAGGGSATSFLEFKKQASFFFKEKIKTARLALTDVTPAQLLTEEATSGNPWAPDTRTLGSISRAAFELDDYLRIVEILHKRLVKFERKNWRATYHS LMLLERLLTHGPESVAKEFHEDRDAIREAQTFQHIDEKGFNWGLAVRKKSERILKLLENEGLLKEERDRSRKLTRGIQGFGSFSEKTSSSKLGILQQSYG RSNSQSNDDSEENKIVSDEKENLFQKVESSMNKYGIFSVDSVNRNRRLEKIETRLKENMAPDDEEEQVNLLLGEDQVAVLAAEEDHHPFTNTEHQTVASS LLSANDGIILQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	0	1
					Lus10033269 [exp]	5.9	0.9387
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	6.5	0.9268
AT1G27170			transmembrane receptors;ATP bi...		Lus10026011 [exp]	8.1	0.9162
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	14.0	0.8848
					Lus10008301 [exp]	16.3	0.9214
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	16.9	0.9179
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	18.8	0.9190
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	19.9	0.9172
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015417 [exp]	20.5	0.9130
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	24.5	0.9193

Compare expression of checked genes

Lus10040824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.