Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 464 / 2e-151 U-box domain-containing protein kinase family protein (.1) AT3G49060 332 / 2e-101 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 317 / 1e-95 U-box domain-containing protein kinase family protein (.1) AT5G57035 312 / 4e-94 U-box domain-containing protein kinase family protein (.1) AT5G51270 305 / 6e-91 U-box domain-containing protein kinase family protein (.1) AT4G25160 304 / 8e-91 U-box domain-containing protein kinase family protein (.1) AT5G61550 300 / 3e-89 U-box domain-containing protein kinase family protein (.1.2) AT5G61560 294 / 2e-87 U-box domain-containing protein kinase family protein (.1.2) AT1G72760 263 / 8e-77 Protein kinase superfamily protein (.1) AT5G26150 258 / 8e-75 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016557 [exp] 1466 / 0 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 394 / 7e-124 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 390 / 2e-122 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 373 / 9e-118 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10039245 [exp] 338 / 2e-103 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10027490 [exp] 333 / 5e-102 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 288 / 4e-85 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 282 / 5e-83 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 272 / 6e-81 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030400 [exp] 889 / 0 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 808 / 0 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 436 / 2e-141 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 401 / 1e-127 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.002G160200 [exp] 400 / 5e-126 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 394 / 2e-123 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 310 / 1e-93 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 310 / 4e-93 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G061600 [exp] 262 / 5e-76 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 259 / 1e-74 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10040825 pacid=23157698 polypeptide=Lus10040825 locus=Lus10040825.g ID=Lus10040825.BGIv1.0 annot-version=v1.0 ATGGAGCTCCTAAACCCGCTCCAATCGGTTCATCGGCAACCGGCGTTCTCCACCAGTTTACCATCGTCGCCGGAATTCCGGTTCGGGTTCGCCCCAATTA TGGAAACTCAGGTAGCTGATATTGTTGAAGAAGCAGCAACTGAACACAGCATCGATTCTGCAACAAGCAACGGGTTGGCCAATGTTTATGTGGCGGTGGG GAAATCGGTGGAAAAGTCAGCAGCTTTGCTTAAATGGAGCTTCAACTTCTTTCCCGGCCACCGCATTTGCTTGCTCCACGTTCACCGCCCGTCTACTCTA ATTCCAACTCTCTTGGGGAAATTGCCAGCGAATGGAGCGAATCCTGAAGTAGTGTTGGCTCATAGAAATGAGGAGAGGCGGGAGATGATGCAGCTTTTGG AGCGTTACTTGGACATTTGTCGTCGAGCTAAGGTTGAAGCAAGTTTTGTTTCCAAGGAATGTGAGCAAGTTCACAGGGGAATTCTGGACTTGGTGGACCA GGAAGGTATTAAGAAGCTTGTTATTGGGGCTTTACCGGAGCATTGGTTGAAGGTTAAGAAGAGTTCCTCCAAGGTGGATTATGTAGCTAAGAACGCTCCT GTATGCTGTCAAATTTGGTTTATCAACAAAGGGAGCCTTATCTGGACAAGAGAAGCTTCCGAAGAAGGTTCGCACCATTTCCAGACCGATGAACATGCTA ATCGCGGAGTTGCTGTCACTACAAGACCACAGCGGTTTATGCGTTCGAGTTCTGGTAGAGGAATAACTTGTGCCAGAGTGGATAACTGGGTACTCCAGAC TGATTGCATTGAAGTGCCTGTGGCATCTACCTCTATCAATGGATGTTTGCCGCCTCGTTTCAGTTCAACTACTAGTTGCTCTGGATCAGGGTCTACTGGA AAAAGGCTGTCTTCTGATTTTGATTGGGAAAGCTTATATTGTCAGCTTGAGGAAGTCAATATTGAAGCAGAAGTGTTGAGGAATACAGCAAATCAGGAGT TGGTCAACTGCAGAAGATTAGAACTTGAAGCTCTACAAGCAATTGGGAAGGTCAAAACCTTTGAATGTACACTTGCACATGAAGTGGAGCTAAGAAGAGA AGCTGAGGACGAACTCAGGAACGTACGCGAAGAACAAGAAAAACTATTGGAAGAGAGGAAAGAGCTCAACAGAGAGCTTCAAAGAACAATGAGAAGTGTT TCCCTTCTCGAGAATCGTGCACACGAAGCGAATCATAGGCGCGATGAAGTAGTTGCAGAGTTAAGACACATTCAGAAATCACTTGCTTCCTTGCGTCAGG AGAAACAGCGAATTAGGCGGAAAAATATGGAAGCTTGGCACCAGCTTGAGCGATGGCAACCCGGTGCTGCTGCTAAATGCAATGGCTTTCTTGGCTATGC CAACGAATTGCCTGAATTTCCATTATCAGACCTGGAAAATGCAACATGCGATTTCTCTGAGAGCTTCAAACTCGGTGGAGGAGCTTATGGTTGTGTTTAC AAGGGTGAAATGCTGGGCAGAACTGTTGCTGTTAAGAAACTACATTCACACAACATGCAAGGCCAATCAGAGTTTCAAAAAGAGGTTCAAGTTCTGGGAA AATTGCAACACCCTCATCTTGTGACTCTACTTGGAGCATGCACTGAAGCATGGTGTCTTATATACGAGTACTTGCCAAATGGGAGTCTCCAAGACCACCT TCTGACGAAAAGCAACAATCTGTCATTAACTTGGCAAACAAGAACAAGGATTATATCCGAGATTGCGAGCGGCCTTTCGTTTCTTCACTCTTCCAAACCC GAAAAGATAGTCCATGGTGACCTGAAACCTCAACACATCTTACTCAATTCTGATCTCGTCTGTAAGATATGCGAGTTCGGAATCTGCAGGCTCGTGTCTG AGGATACCGAACCAAATTTCAGTAGAATCACTGAACCGAAGGGATCATTCCCTTATACGGATCCCGAGTACCACAGGGTCGGAGTTCTGACACCGAAATC CGATGTCTATTCGTTTGGTGTCATTATCTTACAGCTGCTCACAGGAAGGCCTCCTGTTGGGTTGGCAAATGAGATGCGCAGAATGAGATCATCTGGGAAA CTCTCATCCATTTTGGACCGTTCAGCTGGAGAATGGCCGATTTTCGTGACAAAACGTCTCTCCGATTTGGCAATGCAGTTCTGCGAACTGAACAGTCGGG ATAGACCCGAGTTGTCTCCTGCTCTCGTGAGGGAGCTCGAGCAACTTCATGTCCCGGAGGAGCGGCCCGTGCCATCTTTTTCCTTGTGCCCCATTCTTCA GGAAATAATGCATGATCCGCAAATTGCAGCTGATGGATTCTCGTACGAGGGCGAAGCGATTCGAGAATGGTTAGGGAATGGTCATGAGACTTCTCCAATG ACCAATCTGAAGTTGAGTCATCTGCATCTTACTCCTAACCATGCCCTCCGTGTCGCAATCCAAGAATGGCTTTGCAGTTCTTAA
AA sequence Show only first row Show all	>Lus10040825 pacid=23157698 polypeptide=Lus10040825 locus=Lus10040825.g ID=Lus10040825.BGIv1.0 annot-version=v1.0 MELLNPLQSVHRQPAFSTSLPSSPEFRFGFAPIMETQVADIVEEAATEHSIDSATSNGLANVYVAVGKSVEKSAALLKWSFNFFPGHRICLLHVHRPSTL IPTLLGKLPANGANPEVVLAHRNEERREMMQLLERYLDICRRAKVEASFVSKECEQVHRGILDLVDQEGIKKLVIGALPEHWLKVKKSSSKVDYVAKNAP VCCQIWFINKGSLIWTREASEEGSHHFQTDEHANRGVAVTTRPQRFMRSSSGRGITCARVDNWVLQTDCIEVPVASTSINGCLPPRFSSTTSCSGSGSTG KRLSSDFDWESLYCQLEEVNIEAEVLRNTANQELVNCRRLELEALQAIGKVKTFECTLAHEVELRREAEDELRNVREEQEKLLEERKELNRELQRTMRSV SLLENRAHEANHRRDEVVAELRHIQKSLASLRQEKQRIRRKNMEAWHQLERWQPGAAAKCNGFLGYANELPEFPLSDLENATCDFSESFKLGGGAYGCVY KGEMLGRTVAVKKLHSHNMQGQSEFQKEVQVLGKLQHPHLVTLLGACTEAWCLIYEYLPNGSLQDHLLTKSNNLSLTWQTRTRIISEIASGLSFLHSSKP EKIVHGDLKPQHILLNSDLVCKICEFGICRLVSEDTEPNFSRITEPKGSFPYTDPEYHRVGVLTPKSDVYSFGVIILQLLTGRPPVGLANEMRRMRSSGK LSSILDRSAGEWPIFVTKRLSDLAMQFCELNSRDRPELSPALVRELEQLHVPEERPVPSFSLCPILQEIMHDPQIAADGFSYEGEAIREWLGNGHETSPM TNLKLSHLHLTPNHALRVAIQEWLCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	0	1
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	1.0	0.8935
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	1.4	0.8859
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	2.8	0.8624
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	3.2	0.8513
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	3.2	0.8169
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	3.5	0.8500
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	4.2	0.8193
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	4.7	0.8156
AT5G19610		GNL2	GNOM-like 2 (.1)		Lus10021771 [exp]	4.8	0.7867
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	4.9	0.8625

Compare expression of checked genes

Lus10040825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.