Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20898 43 / 1e-05 unknown protein AT3G20900 39 / 0.0001 unknown protein AT2G37610 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016559 [exp] 243 / 2e-82 AT2G37610 39 / 2e-04 unknown protein Lus10037925 [exp] 54 / 2e-09 AT5G02420 47 / 2e-07 unknown protein Lus10038653 [exp] 49 / 1e-07 AT5G02420 47 / 2e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239000 [exp] 68 / 2e-14 AT5G02420 59 / 1e-11 unknown protein Potri.009G030200 [exp] 61 / 2e-11 AT5G02420 49 / 5e-08 unknown protein Potri.010G231600 [exp] 50 / 3e-08 AT5G02420 44 / 1e-06 unknown protein Potri.008G029600 [exp] 45 / 3e-06 AT5G02420 48 / 5e-08 unknown protein Potri.009G003400 [exp] 43 / 2e-05 AT5G02420 45 / 7e-07 unknown protein Potri.001G212300 [exp] 43 / 2e-05 AT5G02420 43 / 8e-06 unknown protein Potri.010G045200 [exp] 42 / 3e-05 AT1G10690 92 / 2e-25 unknown protein Potri.010G231700 [exp] 41 / 4e-05 AT5G04470 / SIAMESE, cyclin-dependent protein kinase inhibitors (.1) Potri.006G084700 [exp] 42 / 6e-05 AT5G02420 57 / 1e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040827 pacid=23157928 polypeptide=Lus10040827 locus=Lus10040827.g ID=Lus10040827.BGIv1.0 annot-version=v1.0 ATGTGCTCGGAATTCACATCGTTTGATCTCGGCCCAAACTCCCAGATGCTCCTTCCCGAGAAAGATCACCTCAACGACGATGACGACCACAGTGGTCCCC ACCAATTCCGCCTCCTCCTCACCCGCTCCTCGCCGGCCACTTCTTCCGATTTCGCAAACGATCAGCAGCAGCAACAGCTATTGTGCGGGATTTTGACCCC AATTTCACATGATTCCACGTCATCATCTTCGTCATCATCATCGCCGGTGCAACAACAACAACCGTTAGATCATCAACAAGAAGAAGAAGAAGAAGAAGCG GTGGCTGACAATGACTGCGTCAGTATCGATTATCCTGAGCTGGCGGTGAAATTTCCGCCCACGTCATCAGGACAAGAACTCATTAATGACGGTGATGGTG GCGTGAGGACTCCGACATCTCCGGGCAGTAGAATTCCGTCGGTCCTAACATGCCCTCCGGCTCCGCGAAAGGCTAAATCGCGGCCGATTACAACGAAGAG GAAACTGATGGAAGGTCGAAGAGTGCTGTTTGTGGATCTGAGTCCCGACGAGATTAATTCCTTGTTCTCTCCGAGGGCGGCGGATCTATACTCCGGCGGC GGCAAAAAGGCTAGACAATAA
AA sequence Show only first row Show all	>Lus10040827 pacid=23157928 polypeptide=Lus10040827 locus=Lus10040827.g ID=Lus10040827.BGIv1.0 annot-version=v1.0 MCSEFTSFDLGPNSQMLLPEKDHLNDDDDHSGPHQFRLLLTRSSPATSSDFANDQQQQQLLCGILTPISHDSTSSSSSSSSPVQQQQPLDHQQEEEEEEA VADNDCVSIDYPELAVKFPPTSSGQELINDGDGGVRTPTSPGSRIPSVLTCPPAPRKAKSRPITTKRKLMEGRRVLFVDLSPDEINSLFSPRAADLYSGG GKKARQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20898			unknown protein		Lus10040827 [exp]	0	1
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	8.3	0.8881
AT2G37610			unknown protein		Lus10016559 [exp]	10.7	0.9049
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	13.2	0.8846
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	14.4	0.8880
AT5G06940			Leucine-rich repeat receptor-l...		Lus10040500 [exp]	15.2	0.8754
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	19.1	0.8726
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	19.7	0.7876
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	19.7	0.8755
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	19.9	0.8892
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	21.9	0.8698

Compare expression of checked genes

Lus10040827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.