Plant FIBer expression Database

Lus10040828 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016560
[exp]
196 / 2e-63 AT5G02440 66 / 2e-13 unknown protein
Lus10023770
[exp]
42 / 7e-05 AT5G02440 97 / 2e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G030100
[exp]
67 / 7e-14 AT5G02440 98 / 1e-25 unknown protein
Potri.001G238900
[exp]
67 / 1e-13 AT5G02440 81 / 4e-19 unknown protein
Potri.006G084400
[exp]
58 / 2e-10 AT5G02440 78 / 5e-18 unknown protein
PFAM info
Representative CDS sequence
>Lus10040828 pacid=23157608 polypeptide=Lus10040828 locus=Lus10040828.g ID=Lus10040828.BGIv1.0 annot-version=v1.0
ATGTCTCAACAACAGCAGGAAGAGGGACTGAGGAGTTTGCAGAGCCTGAATGTGAGAGTTCCAGGTTCGGTCTCCTTCAACAATTTCCTCACTGTTTCAC
CGACTTGGTCCGTATCAGATTCCTCGTCTGATCTTGACACTGAGCAAGGTCAAATGCTTTTTTGTGTGCAGTCAACAGGGTCGTTCTTCCATGACAAGAC
CATCACACTGGGAAGCCTGATAGGGGGTTCCAGCATACTAGAGCTATCTAAGAAATCGAAAAGGAGGAAGAAGAAGATCGAACCTCTCAGAGCGAAAAAG
GCCTGCAAATCAAAACCGTGGATATTCTCCTTGTGTGCAAAGGACCCTATAGGTGATCATGATTCTCAAGGATTGAAGAAAGACAATGTTGAAGCTCCTC
CATCATTAGCACACTTTCTGGCAGTGGAGAGAAGAACAACATCCAGTAACCAAAGCCAGAGCTCTGCAAACTCACTCTTTGTTGATGGCCATGTAGCTCC
TCCTAGGCACAGTGCTGACGGTGGAAGTAGACATGGTCCAGCGTTGTTGCGTTCTTGTGTATGTGGCCAGTCCTCTTAA
AA sequence
>Lus10040828 pacid=23157608 polypeptide=Lus10040828 locus=Lus10040828.g ID=Lus10040828.BGIv1.0 annot-version=v1.0
MSQQQQEEGLRSLQSLNVRVPGSVSFNNFLTVSPTWSVSDSSSDLDTEQGQMLFCVQSTGSFFHDKTITLGSLIGGSSILELSKKSKRRKKKIEPLRAKK
ACKSKPWIFSLCAKDPIGDHDSQGLKKDNVEAPPSLAHFLAVERRTTSSNQSQSSANSLFVDGHVAPPRHSADGGSRHGPALLRSCVCGQSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02440 unknown protein Lus10040828
[exp]
0 1
AT5G02440 unknown protein Lus10016560
[exp]
1.7 0.7633
AT1G06980 unknown protein Lus10038171
[exp]
2.2 0.8257
AT5G60690 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBE... Lus10000719
[exp]
11.5 0.7590
AT1G04360 RING/U-box superfamily protein... Lus10000710
[exp]
13.4 0.7372
AT4G18260 Cytochrome b561/ferric reducta... Lus10020757
[exp]
16.9 0.7350
AT1G04360 RING/U-box superfamily protein... Lus10024881
[exp]
21.6 0.7043
AT4G32880 HD ATHB8, ATHB-8 homeobox gene 8 (.1) Lus10011426
[exp]
22.8 0.7650
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Lus10007748
[exp]
35.2 0.7196
AT4G34500 Protein kinase superfamily pro... Lus10023574
[exp]
36.2 0.7485
AT5G60690 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBE... Lus10021470
[exp]
36.3 0.7474

Lus10040828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.